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Detailed information on CNT30523471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Setaria italicaOryza sativa34.6319.4393.47536forward
CNT30687453Setaria italicaTriticum urartu25.97.595.01401forward
CNT30103479Setaria italicaOryza rufipogon34.6336.2793.84536forward
CNT30115707Setaria italicaOryza nivara34.6312.393.84536forward

Expression of CNT30523471

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MNLHEQFIELGCTCKASVKRATKEAHEIEWLFFLTSKWTGSDGVADVSC*

>peptide 2 (30 aa)
MLQLTTKNARLALRSNSSLSTSIPPQRSCT*

>peptide 3 (70 aa)
MEFPFRQLLCTCPTPFVLWTRTNFTLDHGGWITFSQGSAKLSNADDQTFLQMCMRRKRLTRLSDGNPHNL*

>peptide 4 (53 aa)
MGPRLIEVEYSYGIPLQTTSLHLPNTFRFMDQDQFHLRPWWLDNVLSRICKTL*

Sequence

>CNT30523471
ATGACTGTATTAAACCTTAAGCAATCAGGGTTAAGCTAGCTCATTGCGTGAAAGTGGAGCTCGTATTATACACCTTGACCCCCACCTTTTTCTTAATCCT
TCTAGATATTTGTTGTTAGATAAGAGAAGTCCCATAACTGCCTCATTCAGATCGATTCCAGTCATCACTACAGTCACATCAATCCGTTATGGCTCGGACC
CTCTTAGCTGCTAGATCCTTCGGGAAGCCATAGTAGGGATTACATCAGTATATTCTTAGGCGAGCAGTGGATTATATCACCCCTATTTTGGACCTTCTTT
CTTTTTTAGGCATGGGACCAAGGTTGATCGAAGTTGAATATTCCTATGGAATTCCCCTTCAGACAACTTCTCTGCACTTGCCCAACACCTTTCGTTTTAT
GGACCAGGACCAATTTCACCTTAGACCATGGTGGCTGGATAACGTTCTCTCAAGGATCTGCAAAACTCTCTAATGCTGATGATCAAACATTCCTTCAGAT
GTGTATGAGAAGGAAGCGTCTCACAAGACTCTCAGATGGAAACCCGCACAATCTATGAATTTGCATGAACAGTTTATTGAACTTGGTTGCACTTGTAAAG
CGAGCGTGAAGAGGGCTACGAAAGAAGCCCACGAAATAGAGTGGTTGTTTTTCCTGACTAGCAAGTGGACAGGCTCTGATGGCGTAGCTGATGTGTCATG
CTAGGTATCTTTTTTTGGCCTTTTTTTCTTTCTCTCAAGGGATTGTAGACTTTCCTCTATACTGATAGAAGCAGAGAGGCTAGTAAAAAAGAAGGAAGCA
GGTTGGGTACACATGGTAATAGAACCCACTGGAGATCATTCAATCAGATGTCTTCCACAAAGTCAAGCTAGAGTAAGTGGCGTAAGATAAGATAGATGTT
CACTTTCATCGACCAATGTACCTGAAATTCCTATACTTAAAGTTGAGAGCTAGAGAGAGTAAATGAGACGTTCAAAGGGTGAAGCTAACGCTTCCCTGGC
CACTAGGGAGTCGTCAAAGATCTGACTCTGTTTAATAATACCTTATGTCTCTCTCCTAAGGGATCGAATTAGAAGGAATTCCTTCACTTCGCTCATGATA
GTCGGTCGAGTTCCCTTTTCCATTTTAGTTGAGTTTCACGTCTCCTCCTTTCCTTGTCTCCATTTTGATTGATTCGCTTCTTCGTGCAAGCACTTGGTTC
GCCCTTACTATAACCATCCCACTCAATCTTTTGCACCGATGTTTTGTACTCTCTCGACCAGGTCATCATAAGAAAATACTACCAAATCTTTCTGAAATGA
GAGAAGGAGGGAAGGCATGCTACAACTAACTACTAAAAATGCAAGATTAGCGCTAAGAAGCAACTCTAGTTTAAGTACTAGCATCCCACCCCAACGTTCC
TGTACTTAAAAAGACTCTCCCCCGCTTGCTGCTCGCCTCAGCCAGACGTGGCTTATGTAGTGGTCGGCATTCCTACGTGCTCCGACTGATCCCCATTAGA
GATTATATGAGGGGTCTTGGAAACTGTCGTGACGCTTTGGTGACAAAG