Detailed information on CNT30523464


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LCQ4|LHCA6_ARATH, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564637Setaria italicaActinidia chinensis29.1217.2184.18196forward
CNT30149849Setaria italicaBrachypodium distachyon15.327.5483.5103forward

Expression of CNT30523464

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAHRPAPS

>peptide 2 (67 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLQQVVEGPLAGDVVLDQEPQERQHGQPPCMNRHITSGYG*

>peptide 3 (48 aa)
LRIKHTSQTDDPHRKEFTSIAYQCMSSCPHQPTKLVITPRRLNRRKSG*

>peptide 4 (38 aa)
MVSKHLKLPADGDRVVTGSDATHRWRAPSPWPRAWARS*

>peptide 5 (35 aa)
SGLNTHHKLMIHTERNSHRSRINVCPPVPISPPNW*

Sequence

>CNT30523464
CTCCGGATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTATCAATGTATGTCCTCCTGTCCCCATCAGCCCACCA
AATTGGTGATCACTCCCCGTCGACTCAACCGGAGAAAGTCTGGATGATGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTGCCGGTGACGTTGTGCTGGAT
CAGGAACCCCAGGAACGCCAGCATGGCCAGCCTCCCTGCATGAACAGGCACATCACATCCGGATATGGTTAGTAAACATTTAAAGTTGCCGGCGGACGGC
GACCGTGTAGTCACGGGATCAGACGCTACTCACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGCGTGGGCGCGAAGTTGAGCGGGTTGAAGACGCTGCC
GGGGTATCCGCACTCGTGGGGCGGCAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTCG
ACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTACTCCGACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATGAGCC
CGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCCGCCCCCTCTGT