Detailed information on CNT30523296


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69QQ6|HSP82_ORYSJ, E-value = 9e-50

BLAST vs NONCODE:
NONBNAT003938, E-value = 1e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019808Setaria italicaCitrullus lanatus26.2518.8181.75126forward
CNT30158908Setaria italicaPistacia vera26.677.8381.25128forward

Expression of CNT30523296

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MNSFVPDRAMVPRLFTRSDLVIPIPLSMIVSVLEALSGTMWMNSSGWASSLLLSVKLSNLILSK

>peptide 2 (82 aa)
LIILEVEGHLGTPAKGLPRGITCDGEGATSLRLPHVLLIIVVLGGHNNSLSNKVGRVETNSKLTDHRHISTSSQSLHELLCS*

Sequence

>CNT30523296
CTGATCATCCTTGAGGTAGAGGGTCATCTTGGTACCCCTGCCAAGGGTCTCCCCAGAGGTATCACGTGTGACGGTGAAGGAGCCACCAGCCTGAGACTCC
CACACGTACTGCTCATCATCGTTGTGCTTGGTGGTCACAACAACTCTCTCAGCAACAAGGTAGGCAGAGTAGAAACCAACTCCAAACTGACCGATCATAG
ACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTTCCTGACCGTGCAATGACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTT
GTTCCTGACCGTGCAATGGTACCAAGGTTGTTCACGAGATCTGACTTGGTCATACCAATACCACTGTCAATGATTGTCAGTGTGTTGGAGGCCTTGTCAG
GAACAATGTGGATGAACAGCTCTGGCTGGGCATCGAGCTTGCTCTTGTCCGTCAAGCTCTCAAACCTGATCTTGTCCAAG