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Detailed information on CNT30523258


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84PD8|SAP11_ORYSJ, E-value = 8e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675627Setaria italicaSetaria viridis19.5232.3499.08218forward
CNT30444092Setaria italicaAegilops tauschii17.9124.7291200forward
CNT30141231Setaria italicaLolium perenne19.0720.7687.79213forward
CNT30330555Setaria italicaDioscorea rotundata8.4230.4286.1794forward
CNT30102874Setaria italicaOryza rufipogon17.8222.6789.95199forward
CNT30117496Setaria italicaOryza nivara17.8221.5189.95199forward

Expression of CNT30523258

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLPPSQNLTILAARTTGFSRAMASRPTPL*

>peptide 2 (53 aa)
MPPMICSIFFPSSSSSCLWDPQEQHDDNTLARPVTFKFLVKKEKKEKRNKKGT*

>peptide 3 (90 aa)
MAPVDRRRPGRLVGRGRLHGPPRWPVNGRRERRHHRQRRWRREGGGRSWPRLVERRGGSRRGRRRRPGSSSGTGSWWPGSPGSRSCWRRA*

Sequence

>CNT30523258
AGGTAGTAGCTCAAGCTGGGCAATAGGGAGATTCCAATTTATAATTTAATTTTATACAGAGAGAGAGAGAGAGAGAAAATTAAATAGAAGATTGTGATTT
GTAGTAGGACAACACACCAAACCAACCCTATCTCTTCCCCTCCACCCCCAACCACCGCTACAACAACATTATCATCGCACTGTTCTTGCTTTTGATCCCT
TTCGTAGCTGCTTCCCCGCCTGCCATGCCTCCCATGATCTGCTCCATCTTTTTTCCTTCATCTTCTTCTTCTTGTTTATGGGATCCTCAAGAACAGCACG
ATGATAACACCCTCGCTCGACCGGTCACCTTTAAATTTCTTGTAAAGAAGGAAAAGAAAGAAAAGAGAAATAAAAAGGGAACTTGAGAGGGAGATCCAAC
GATCGATCGATCTCTGCGGATCGGTGTAGGCGTCCTCCGTCCGATGCTCCCTCCCTCTCAGAACCTAACGATCTTGGCCGCGCGCACGACGGGGTTCTCC
CGGGCGATGGCGTCCCGGCCGACGCCCTTGTAGTCGAAATTGCAGTCGTGGCGGTCCGAGTACCGGTGCGCGCCGCAGAAGAGCTCGCCGCACCGGCACC
GGAACCCCGTCAGCCCCACGCGCTTCCGGCAGTTATGGCACCGGTTGACCGACGACGTCCGGGGCGCCTTGTTGGAAGAGGACGACTCCACGGGCCCCCC
CGCTGGCCGGTCAACGGCCGGAGAGAACGGCGCCACCACCGCCAGCGGCGTTGGCGCAGAGAAGGCGGAGGCCGCAGCTGGCCACGGCTTGTCGAACGCC
GCGGTGGTAGTAGAAGGGGACGGCGACGGCGGCCAGGAAGCAGTTCTGGCACAGGTTCTTGGTGGCCGGGTTCCCCGGGAAGCCGCAGCTGTTGGCGCAG
AGCGTGAGCTCCGGCGCGTGCAGCTCCGTTGGCTCCTCCACCTTCTTGTCGCGCTGCGCCATGAGAAAATAGGTGTGTGTGTAGAGCCTCGCGACGGCTC
GGTGTGAATCCGGCAGCGAGGCGGCGGCTCTGGGCGATCCGGCGGGGCCGCGGGGAGGGGAGGAGAGCAGAGCACAGGAGGAGGCGGAGGCACACCGGCG
GCCTGGCCTGAGCTGAG