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Detailed information on CNT30523217


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FU27|C3H2_ORYSJ, E-value = 8e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30181361Setaria italicaSecale cereale60.3449.0786.79318forward
CNT30245719Setaria italicaAvena sativa68.6957.6486.46362forward

Expression of CNT30523217

Peptides detected in this lncRNA

>peptide 1 (43 aa)
ARRARPDSTLCTGSSSPPPKETSSGSRLAMKPPPMVVGVEGRL*

>peptide 2 (30 aa)
WREGHARTPPSARAPPRRRRRRHQAAPGWP*

>peptide 3 (88 aa)
GAKGTPGLHPLHGLLLAAAEGDIKRLQVGHEAAAHGRRGGGQAVEPSRRGRGPRSPGTRRRARSRGGRRRPRPATMAGTPTAATWAAT*

Sequence

>CNT30523217
TGGCGCGAAGGGCACGCCCGGACTCCACCCTCTGCACGGGCTCCTCCTCGCCGCCGCCGAAGGAGACATCAAGCGGCTCCAGGTTGGCCATGAAGCCGCC
GCCCATGGTCGTCGGGGTGGAGGGCAGGCTGTAGAGCCCAGCCGCCGTGGGCGAGGACCTCGTTCACCGGGGACCCGACGCCGGGCCAGGAGCCGCGGCG
GTAGGCGGCGGCCCCGTCCGGCGACAATGGCGGGGACTCCGACGGCGGCGACTTGGGCGGCGACATGAGGGTGCTGGTGGGCGAGGACGACATGATGCTC
TTGGTGAGGTAGCTCTCGAACGCCTGGCGCCGGAGCGGGGAGCCGTCGTAGGACTCGGCGAGCGGGGAGGCCGCGGCCGCCGTCCCCCGCGGGCTGGACT
GCTGCGGCGGGAGGACGCGGAGCTGGTCCGGTGTGTGGGCGAAGAAGCACACCCGACGGCGGCAGGCGGTGCCGGAGTAGTGGTACTTGCGCGGGTCCCG
GCGGCGCGCCTTCTCCCCCGGGTGCGC