Detailed information on CNT30523179


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Setaria italicaOryza sativa55.875.4990.91154forward
CNT3088158Setaria italicaVigna radiata23.917.0686.3666reverse complement
CNT30256205Setaria italicaAvena sativa69.9315.4882.9193forward
CNT3015666Setaria italicaZea mays39.133.4284.26108forward
CNT30349956Setaria italicaEragrostis tef93.8410092.66259forward
CNT30596976Setaria italicaOryza meridionalis71.3868.1791.88197forward
CNT30370968Setaria italicaOryza glumipatula60.5142.0792.22167forward
CNT30646316Setaria italicaCannabis sativa59.0642.7880.37163reverse complement
CNT30147808Setaria italicaBrachypodium distachyon35.516.5383.6798reverse complement
CNT30103646Setaria italicaOryza rufipogon67.7524.1691.98187forward
CNT30174954Setaria italicaVigna angularis19.5721.0988.8954reverse complement

Expression of CNT30523179

Peptides detected in this lncRNA

>peptide 1 (45 aa)
CDILAQGLIGLIEYSYQQVATSFPEAHPQRTPGLSVLGPEQFRDG*

>peptide 2 (33 aa)
MGDRLGSSSRVCTSEDKVRRKDLCWSVREFLIS*

Sequence

>CNT30523179
CTGTGACATCCTAGCCCAAGGCTTAATAGGATTGATAGAATACTCATACCAACAAGTTGCAACTTCTTTTCCGGAAGCTCATCCTCAAAGAACTCCGGGG
TTAAGCGTGCTTGGCCCGGAGCAATTTCGGGATGGGTGACCGACTGGGAAGTTCTTCCCGGGTGTGCACGAGTGAGGACAAAGTGCGCAGAAAAGACTTG
TGTTGGTCTGTGAGGGAATTCTTGATATCCTAGAGAGCTGCCAGGTGTAAGCGGGCCCGGCCCCGGGGGGGGGGGG