Detailed information on CNT30523172


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ARZ9|R27AA_ORYSJ, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693823Setaria italicaOryza sativa29.5455.4992.51187forward
CNT30674820Setaria italicaSetaria viridis43.7652.26100277forward
CNT30500037Setaria italicaCoffea canephora29.0731.488.59184forward
CNT30285916Setaria italicaTriticum aestivum21.0121.7797.74133forward
CNT30553804Setaria italicaOryza glaberrima21.0122.0696.99133forward
CNT30435581Setaria italicaAegilops tauschii21.0126.5596.99133forward
CNT30656187Setaria italicaTriticum dicoccoides21.0119.8297.74133forward
CNT30142281Setaria italicaLolium perenne28.5923.5493.37181forward
CNT30369422Setaria italicaOryza glumipatula27.0113.0797.08171forward
CNT30580001Setaria italicaEchinochloa crusgalli44.5538.6393.26282forward

Expression of CNT30523172

Peptides detected in this lncRNA

>peptide 1 (41 aa)
AGVLFQENYFNMRQKRKLSSSKTFHFPSPQHNSGAPYACWL*

>peptide 2 (44 aa)
QEFCSKKTTLTCDKKENYHLARLSIFLLPNITAEHPTPAGCRRR*

>peptide 3 (49 aa)
MPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAGAPFPAAAALT*

Sequence

>CNT30523172
GCAGGAGTTCTGTTCCAAGAAAACTACTTTAACATGCGACAAAAAAGAAAATTATCATCTAGCAAGACTTTCCATTTTCCTTCTCCCCAACATAACAGCG
GAGCACCCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTTCCCGCGCCGCACTC
GGCGTTGGGGCATTCCTTGCGGAGGCGGGTAACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGCACGGCGAGCTTTACCTTCTTGTGCTTGTGC
TTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCCCCTCCCCTGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT
AGTCGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTGATGGTCT
TCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCAGGCGCGCCCTTCCCGGCGGCGGCCGCCCTTACCTGAGGTGGAGGAGGGGGAGGCGCTGGTTC
TCGCCTGCGGCGGCGGGGTGGAGTGGTGTGGTC