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Detailed information on CNT30523111


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43007|PLDA1_ORYSJ, E-value = 4e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183339Setaria italicaSecale cereale16.9122.9293.7580forward
CNT30314174Setaria italicaCamelina sativa11.2124.288.6853forward
CNT30470204Setaria italicaSaccharum spontaneum21.9916.8386.54104forward
CNT30134923Setaria italicaLolium perenne46.0931.5589.45218forward
CNT30719439Setaria italicaMalus domestica golden35.9424.7581.76170forward
CNT30477502Setaria italicaArabidopsis halleri17.5523.8584.3483forward
CNT30363513Setaria italicaSorghum bicolor39.7536.1588.83188forward
CNT30705730Setaria italicaPrunus avium32.3531.9484.97153forward
CNT3022274Setaria italicaPopulus trichocarpa30.2329.3684.62143forward
CNT30148362Setaria italicaBrachypodium distachyon20.0811.4788.4295forward
CNT3099734Setaria italicaOryza rufipogon32.1421.2391.45152forward

Expression of CNT30523111

Peptides detected in this lncRNA

>peptide 1 (35 aa)
KLHQTGTQHNLYAVLVISSSSSYRPNHAQCTYYHS*

>peptide 2 (56 aa)
KATPDRDTAQSVRSISNKQLFLLSSQSCTMHLLSFVATTTLLSEPSVSETNTKTPS*

>peptide 3 (68 aa)
MLSGCWNTSSNMPRCSYHSAIRKPWIWPRAGCLVARWYGWYAPMAISESLAPSMDLWLMLAEPMMMYSS

Sequence

>CNT30523111
CAAAGCTACACCAGACAGGGACACAGCACAATCTGTACGCAGTATTAGTAATAAGCAGCTCTTCCTCCTATCGTCCCAATCATGCACAATGCACTTATTA
TCATTCGTAGCTACAACAACACTACTATCTGAACCTTCAGTGTCTGAAACAAACACAAAGACACCAAGCTGAGGAGGTGCCCTGGGAGGTCCTGCTCCAG
GTCGTCACTCGAGTACAGGTCCCAGTACTTCTCGGCAATCTTGTTCACCTTCTGCACGCACTCCATGCTCTCCGGGTGTTGGAACACGTCATCCAACATG
CCCAGGTGCTCGTACCACAGCGCCATCCGGAAGCCGTGGATCTGGCCACGTGCAGGCTGCCTGGTCGCCAGGTGGTACGGCTGGTACGCGCCCATGGCAA
TCTCAGAGTCCCTGGCGCCATCCATGGACCTCTGGTTGATGTTGGCAGAACCGATGATGATGTACTCGTCGTC