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Detailed information on CNT30523103


BLAST search results

BLAST vs Swiss-Prot:
sp|P49120|H2B4_MAIZE, E-value = 7e-31

BLAST vs NONCODE:
NONORUT000045, E-value = 6e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671720Setaria italicaSetaria viridis40.8361.4798.55276forward
CNT30702570Setaria italicaQuercus lobata19.3826.288.55131forward
CNT30526697Setaria italicaPhaseolus vulgaris19.0849.0586.82129forward
CNT30632073Setaria italicaVigna unguiculata26.6323.9482.78180forward
CNT30565715Setaria italicaActinidia chinensis29.1425.187.82197forward
CNT30439348Setaria italicaAegilops tauschii55.4764.9991.2375forward
CNT30597299Setaria italicaFraxinus excelsior29.1435.8880.2197forward
CNT30205622Setaria italicaHelianthus annuus10.9527.4189.1974forward
CNT3052765Setaria italicaAmborella trichopoda21.1528.1587.41143forward
CNT30103076Setaria italicaOryza rufipogon28.8532.3495.38195forward
CNT30174435Setaria italicaVigna angularis26.6326.8782.22180forward
CNT3065708Setaria italicaSelaginella moellendorffii18.9336.8984.38128forward
CNT30114697Setaria italicaEutrema salsugineum19.3821.3783.21131forward

Expression of CNT30523103

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVQHIKSTSTISRIYTLTIHFHFHNSIQQC*

>peptide 2 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLSTLKM*

Sequence

>CNT30523103
ACGTAGTCAATATATAGATCAGGCACCATGGCCGTTCCAGATCTATTATGGTGCAGCACATCAAGAGCACTAGCACAATTTCACGCATCTACACACTAAC
CATCCATTTCCATTTCCATAATTCCATTCAACAGTGCTGATGACAATACTACTGCTACCAGATAAGTTAAACTGAGAGAGCCAGGACTACACACAACCCA
ACCAAACTAGTACTAGCACCACCAGACACGGAACCTATCTAAGATGAGGCGGACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAG
CGGGCAAGCTTGGCGGCCTCGGCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGT
GCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTGGCCTTCTTCTTGCCCTTCTTGCCCTCGCCGTCCTTGCCGGCGCT
GGATTTGCCCGCGGGGAGGCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCCTTCTCGGCCGCGGGCTCCTCCTCCGCGGGCTTCTTC
GCCGCCGGCTTCTTCTCCGCCTTGGGCGCCATCGGTGCTGCGGCTGCTTGGGTTTCGCGGCGCGGTGGGATTTGGT