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Detailed information on CNT30523073


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690471Setaria italicaOryza sativa18.6951.3485.07134forward
CNT30674416Setaria italicaSetaria viridis20.543.36100147forward
CNT30552300Setaria italicaOryza glaberrima18.6920.485.07134forward
CNT30456955Setaria italicaSaccharum spontaneum17.8544.9189.06128reverse complement
CNT3014036Setaria italicaZea mays19.826.7492.96142forward
CNT30363793Setaria italicaSorghum bicolor19.3929.2688.49139forward
CNT30595494Setaria italicaOryza meridionalis18.5520.3485.71133forward
CNT30369328Setaria italicaOryza glumipatula18.6924.0185.07134forward
CNT3099716Setaria italicaOryza rufipogon18.6923.6785.07134forward
CNT30574883Setaria italicaOryza barthii9.6220.4195.6569forward
CNT30497728Setaria italicaDigitaria exilis22.7329.2193.25163forward
CNT30115620Setaria italicaOryza nivara18.2724.2687.02131forward
CNT30557683Setaria italicaPanicum hallii18.1336.0197.69130forward

Expression of CNT30523073

Peptides detected in this lncRNA

>peptide 1 (87 aa)
TIYLDVVRFTSQAFIHLDHKLIIFVVRTQAACMHTHHRQSTYTHTYPAGRIRYTQTYTSIVHMGEHTRAYVTRGSDPADTCSLMELA*

>peptide 2 (58 aa)
NNLPGCGPIHITSFYSFRSQAYYFRSSYTGCVHAHTPPSKYVHTYIPGRPDTVYANLY*

Sequence

>CNT30523073
CAACAATCTACCTGGATGTGGTCCGATTCACATCACAAGCTTTTATTCATTTAGATCACAAGCTTATTATTTTCGTAGTTCGTACACAGGCTGCGTGCAT
GCACACACACCACCGTCAAAGTACGTACACACATACATACCCGGCCGGCCGGATACGGTATACGCAAACTTATACTAGCATCGTACATATGGGGGAGCAC
ACACGCGCATACGTGACACGTGGCTCAGATCCAGCAGATACGTGTTCGTTGATGGAGCTCGCGTGAAGCCGGTTAGTCGTCGGCCCTGACGGCGAAGTTC
TCCTTGCGCTCGTGGAACTCGCCGATACGTGCGTCGTCGTCGATCGAGCCCGCGTGAAGCCGATCTCAGTCGGACCTGACGACGTAGCTCTCCTTGCGCT
CGTGGAACTCGCCGGTGCAGGTGTTGAAGTCCTCCTCCACCGTGGTCTCGCGCATCACGAAGTTGCCGGAGCCGTGGCCGTGGCCGTGGTGGCCGTGGTG
GCCGTGGTGGCGGCCGTGGCTGCCGGTGCGGGAGACCCTGTCGACCTCCTCGAACTTCTCCCTGACGACGTGCTGCTGGACGCCGCCGTGGCGGCCGAAG
CCGGCCGGGCTCGCCACCGACCTCACCTCCTCCGAGCAGTAGTCAACCTCCTGGTAGTGAGCCATTGGTGATGATGCTTGGGTTACTTGTTCAGTGCCTG
TATGCCTTGAAGTGCTT