Detailed information on CNT30523062


BLAST search results

BLAST vs Swiss-Prot:
sp|A5H8G4|PER1_MAIZE, E-value = 5e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552443Setaria italicaOryza glaberrima30.3415.3191.3115forward
CNT30473406Setaria italicaSaccharum spontaneum26.399.9988100forward
CNT301235Setaria italicaZea mays31.669.8584.17120forward
CNT30338445Setaria italicaEragrostis tef20.056.4690.7976forward
CNT30595986Setaria italicaOryza meridionalis27.9711.0885.85106forward
CNT3099522Setaria italicaOryza rufipogon32.9815.1388125forward
CNT30575036Setaria italicaOryza barthii30.6110.5188.79116forward

Expression of CNT30523062

Peptides detected in this lncRNA

>peptide 1 (36 aa)
FLNRKESQWERPMVWEPESTTMSSALRPLRPNPSVI*

>peptide 2 (52 aa)
MSAQDTVRGQLRSTAAFAASITSKPRRLGLFGGASRSVLPPPGFTFRRTEASQ

>peptide 3 (61 aa)
VLEQEGVAVGAADGVGTGEHHHVLGAEALAAEPIGYLERRPAWRCCRRADPRAPGRRRYCR*

Sequence

>CNT30523062
GTTCTTGAACAGGAAGGAGTCGCAGTGGGAGCGGCCGATGGTGTGGGAACCGGAGAGCACCACCATGTCCTCGGCGCTGAGGCCCTTGCGGCCGAACCCA
TCGGTTATCTAGAGCGTCGTCCTGCCTGGAGATGTTGCCGTCGCGCCGACCCGCGGGCACCTGGTAGAAGGCGTTACTGCCGGTGAGGTTGACGCTGTCG
CGGGCCGCGAAGGCGAGGATGTCGGCGCAGGACACCGTGCGCGGGCAGCTGCGCTCCACGGCGGCCTTCGCGGCGTCGATCACCTCGAAGCCGCGGAGGC
TCGGGTTGTTCGGCGGCGCGTCACGCTCCGTGCTGCCGCCGCCGGGGTTCACCTTCAGGAGGACGGAGGCGTCGCAGCC