Detailed information on CNT30523034


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 3e-28

BLAST vs NONCODE:
NONSTUT000620, E-value = 9e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30246606Setaria italicaAvena sativa40.9648.1296.09179forward
CNT30456592Setaria italicaSaccharum spontaneum44.3923.697.94194forward
CNT30719745Setaria italicaTriticum spelta35.731.3997.44156forward
CNT30497500Setaria italicaDigitaria exilis58.1217.1696.85254forward

Expression of CNT30523034

Peptides detected in this lncRNA

>peptide 1 (57 aa)
NDTISSKPKVSITIRDAGVLFQENYFNMRQKRKLSSSKTFHFPSPQHNSGAPYACWL*

>peptide 2 (57 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAGAPFPAAAALT*

>peptide 3 (45 aa)
MQEFCSKKTTLTCDKKENYHLARLSIFLLPNITAEHPTPAGCRRR*

Sequence

>CNT30523034
AACGACACGATATCATCAAAACCAAAAGTAAGCATCACCATAAGAGATGCAGGAGTTCTGTTCCAAGAAAACTACTTTAACATGCGACAAAAAAGAAAAT
TATCATCTAGCAAGACTTTCCATTTTCCTTCTCCCCAACATAACAGCGGAGCACCCTACGCCTGCTGGTTGTAGACGTAGGTGAGCTGCTTGCCGGCGAA
GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTGATGGTC
TTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCAGGCGCGCCCTTCCCGGCGGCGGCCGCCCTTACCTGAGGTGGAGGAGGGGGAGGCGCTGGTT
CTCGCCTGCGGCGGCGGGGTGGAGTGGTGTGGTCGAC