Detailed information on CNT30522978


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A7G2A2Z3|NLTP_MACIN, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222192Setaria italicaHordeum vulgare19.8424.2593.1573forward
CNT30245643Setaria italicaAvena sativa19.5731.1788.8972forward
CNT30107025Setaria italicaOryza longistaminata44.0217.986.42162forward

Expression of CNT30522978

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MYVPEPPAALLATFLRQPQMVRRSGVLLACRSRVLYTVVHDMAARTAAGGAARVAARSTASASVASLGAAMPRSLSPCPSVTRTRWRRAAS*

>peptide 2 (54 aa)
MTWPRAPRPGEPPGSPPGARPAPASRASEQPCLGASLLVPRSHVQDGGEQRAKA*

>peptide 3 (66 aa)
RVAVDAGADLVGQGDAALAGQHGSAVDVRAGAAGGAVGDVLEAAADGAAVGGVAGLPQQGVVHRGA*

Sequence

>CNT30522978
CGTGTTGCAGTTGACGCTGGTGCTGATCTTGTAGGGCAGGGAGACGCCGCACTTGCTGGGCAGCACGGCAGCGCGGTCGATGTACGTGCCGGAGCCGCCG
GCGGCGCTGTTGGCGACGTTCTTGAGGCAGCCGCAGATGGTGCGGCGGTCGGGGGTGTTGCTGGCCTGCCGCAGCAGGGTGTTGTACACCGTGGTGCATG
ACATGGCCGCGCGCACCGCGGCCGGGGGAGCCGCCAGGGTCGCCGCCAGGAGCACGGCCAGCGCCAGCGTCGCGAGCCTCGGAGCAGCCATGCCTCGGAG
CCTCTCTCCTTGTCCCTCGGTCACACGTACAAGATGGCGGAGAGCAGCGAGCTAAAGCCTGAGTGGTG