Detailed information on CNT30522968


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M2T2|PP16A_ARATH, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293057Setaria italicaTriticum aestivum15.6224.9789.05210forward
CNT30437732Setaria italicaAegilops tauschii15.7730.8690.57212forward
CNT3014485Setaria italicaZea mays7.3747.694.9599forward
CNT30339116Setaria italicaEragrostis tef13.5425.5389.56182forward
CNT30364121Setaria italicaSorghum bicolor16.7434.1993.33225forward
CNT3099938Setaria italicaOryza rufipogon18.323.2192.28246forward

Expression of CNT30522968

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSPIRSPPTAPPSSPAPSPIPKLFFFFCGFTACCWYPYPACGG*

>peptide 2 (44 aa)
FFLSSFWNRKRLKFGANQSKKQNKTVIHIYITVSASKMHNLIWS*

>peptide 3 (43 aa)
MVAAERSRGLLGGDGERLKRWIGSSKLIGLCCGSQFAKTWGIVS

>peptide 4 (49 aa)
MWTSPTSRSPRARSARRSTWRDPAPLAGTVKRSVAFQVGFRPPVRDTTA*

>peptide 5 (35 aa)
VLSFIFLEQKEVEVRCKSEQKTKQNCDSYLHYRIS*

Sequence

>CNT30522968
GTTCTTTCTTTCATCTTTTTGGAACAGAAAGAGGTTGAAGTTCGGTGCAAATCAGAGCAAAAAACAAAACAAAACTGTGATTCATATTTACATTACCGTA
TCAGCTAGTAAGATGCATAATTTGATTTGGTCCTGACAGTTAGGTGAGTAGTACAAACAAAACATATCACAAAGGAAAATCCAAAAAAACTGAAGACCTC
TGCGGCGATATCCTCATCGGAGCGCTCTAGAAATCAAAGCCGCCGTCGTCGAACCCGGCGTCGTAGCCGGCATCGTACGCCGACGCGTCCGACATCATGT
CCCCGATCAGGAGCCCGCCGACGGCGCCTCCGAGCAGCCCGGCCCCGAGCCCCATCCCGAAGTTGTTCTTCTTCTTCTGCGGCTTCACGGCCTGCTGCTG
GTACCCGTACCCGGCCTGCGGCGGGTAACCGTATCCGTACCCGGCTTGCGGCGGCGGGGGCGGGTAGCCGTAGCCGGCGGGCTGCTGCGGTGGGTAGCCG
TACCCGTACTGCGGCTGAGGAGCGGCGTAGGGCGCCGCGGTGCTGGGGCCGGCGGCAGGGTAGGCTGTCACTGGTTCACCTGCCTTTGCCGGCTTGCCCG
AGGCTGGCGGGTAGCCGGATTGGGGCGGATAAGCGGTTGCCGGCGCGTCGGCCTTGCCGGTGGGCGGATAGGCGGTGGGAGGCGGGTACGCGTCGGCCTT
GGCTGCCGGCGGGTAGGCGGAGGGAGGCGGGTACGCATCGGCCTTGCCTGCCGGCGGGTAGGCGGAGGAAGGCGGGTAGGCGGCGGCCGGCGGAGGCTGG
GTGTAGGCGGACTGGGCGGGGGTGGGAGCGTACCCGCCGGCCGATTGGGTGACCTCGCCGAGCTTGTATGAGAAGTTGAGGACTCCCTGGGGCTTGGCGG
AGGAGATCTTGCGGACCTGGTAGGCGACGAACTTGGCGGGGACGGGGCCGTCGGGGGCGCCGGAGAGGAGCTCGGAGAGCGGGATGTGGACCTCGCCGAC
GTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGTACGTGGAGGGATCCCGCGCCGCTGGCGGGGACGGTGAAGCGGAGCGTGGCGTTCCAGGTGGGG
TTCCGGCCGCCGGTGCGCGACACCACGGCGTAGACCTCCATCTTGGAGAGCAGGTTCACCTCCTTGAGATCCTTGGCCGAGATCAGCGTCAGCTCCAGCG
TCCTCGTCGCCATGGTTGCTGCTGAGAGATCCCGCGGACTTCTCGGTGGAGACGGGGAGAGACTCAAGAGATGGATTGGTTCTTCGAAATTGATCGGTCT
GTGTTGCGGATCGCAATTCGCAAAGACTTGGGGGATTGTTTCGA