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Detailed information on CNT30522951


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3014551Setaria italicaZea mays13.6224.6488.24119forward
CNT30354556Setaria italicaEragrostis tef19.3453.1489.35169reverse complement
CNT30580030Setaria italicaEchinochloa crusgalli34.6738.9592.41303forward

Expression of CNT30522951

Peptides detected in this lncRNA

>peptide 1 (52 aa)
DHINSERKSTVNVSESTDRSKTKSYNLLAEMIHTAVHNLIALVMTLPAEAAE*

>peptide 2 (43 aa)
MTDICSYLLTRSSCSRGDERGVHGHIVVVNTQYHRSGSFRSVG*

>peptide 3 (97 aa)
MQSRRRAWRAWAYRRRQYPIPSIWIVQVSWMMISCSSSRAAPCAPAGPRSGPPSARGARGKRSRRRPAPPPSPRRPRSCASARAPGAPCACAPSPPS*

Sequence

>CNT30522951
GGATCACATAAACAGTGAAAGAAAATCCACTGTGAATGTTAGTGAGAGCACTGATCGATCAAAAACAAAGAGCTACAACTTATTAGCTGAGATGATACAC
ACTGCTGTACATAACTTAATCGCATTAGTAATGACGCTACCTGCCGAGGCAGCAGAGTGATTACATTATTATCGCAATCGATCGGTAGTAACAGTAGTAG
TGAGCAACACACACAGGTGATGACAGACATCTGCTCTTATTTACTTACACGCTCGTCATGCAGTCGCGGCGACGAGCGTGGCGTGCATGGGCATATCGTC
GTCGTCAATACCCAATACCATCGATCTGGATCGTTCAGGTCAGTTGGATGATGATCAGTTGCAGTAGTAGCCGTGCGGCACCCTGTGCTCCTGCTGGCCC
TCGTAGTGGGCCTCCTTCTGCTCGCGGTGCTCGTGGTAAGCGTAGCCGCCGGCGCCCAGCGCCGCCGCCGTCGCCACGCCGGCCTCGATCTTGTGCCTCT
GCGCGTGCTCCGGGCGCTCCTTGTGCTTGTGCTCCCTCTCCTCCCTCTTGAAGTGCTCCTGCCCGCCGCCGTAGCCGTAGCCGCCGCGGGAGTACTCGTC
GGAGTAGACGGCGGCCTGTCTGCCGCCGCCGTAGCCGCCGGCGCCGTTGTAGCAGTCGTCGGCGTACGCGCCCGGCCTCCTGCGGTCGACGTCGTCGTAG
CACTCGTCGGTGTGCGAGTACATCCTCCGGCTGCCGTGCCTGCCGGCGTCGTAGCACTCGTCGGTGCTCGAGTACATGCTCCTGCCGCCGTGGTAGTAGT
CAGCCATCTCGACCGGGGTTGTTGGGCTGGGTCACAAGGGATTTGCTTGCTGTTTGGGCACGAGTTGCTTTGAG