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Detailed information on CNT30522945


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4I5|ERF69_ARATH, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552163Setaria italicaOryza glaberrima23.7716.1787.79131forward
CNT30457661Setaria italicaSaccharum spontaneum73.1436.2189.58403forward
CNT30364010Setaria italicaSorghum bicolor52.4545.5890.66289forward

Expression of CNT30522945

Peptides detected in this lncRNA

>peptide 1 (37 aa)
GRRGSPSGRCRVAAARAEGPGRTPGRPAAAQLQWTAG*

Sequence

>CNT30522945
CAGGCCGGCGCGGAAGTCCATCGGGTCGATGTCGGGTAGCTGCAGCCCGCGCAGAAGGTCCTGGTAGAACTCCGGGTCGTCCGGCAGCTGCGCAGCTTCA
GTGGACGGCAGGATAGGTGTTGCAACCGGCTCCGGCGACTCAGCCTTCAGTGCAGCCGAGGTGGACGACGAAGAGGAGGCCGTCGGGGTGGCGCTTGCCG
AAGAAGCTGGTGAAGAAGCGGGCACGGGCTGCCCGCGGCGCCGGCGTTTTTCATCGGCGAAGCTCCTGGAAGCGGACAGGTAGGCGGCAGAGGCCGCGCC
GGCGGTGTCGAAGGTGCCAAGCCACTGCCTCTTGCCGGTGAAGGGGTTGCGGATCTCCGCCGCCCACTTGCCCCACTTGCGGAGCCTGACGCCGCGGTAG
CTCTCCGGCGACCCGCCGCTGGTGGACGCGGCCACAGTAGCCGCCGGGAGAACCGGCTTCGGTGGGGCCTTGCCGACGAACATCTCAAAAGAGAAGCGCT
TGGACTTGACAGGGCCCGTCGGGGCGCCGGCCTCCTCGTCGTCAGAGTCCG