Detailed information on CNT30522907


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 4e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Setaria italicaOryza sativa24.9644.4890.78141forward
CNT30536141Setaria italicaEucalyptus grandis21.0632.7885.71119forward
CNT30181670Setaria italicaSecale cereale46.992.6695.09265forward
CNT3082886Setaria italicaBrassica juncea19.4742.884.55110forward
CNT30230974Setaria italicaAnanas comosus21.7719.2289.43123forward
CNT30714885Setaria italicaMalus domestica golden22.1225.6787.2125forward
CNT30720826Setaria italicaTriticum spelta48.8546.3192.39276forward
CNT30597158Setaria italicaOryza meridionalis50.2741.490.14284forward
CNT30355705Setaria italicaLactuca sativa26.0240.2780.27147forward
CNT30371509Setaria italicaOryza glumipatula51.6850.4390.07292forward
CNT30105031Setaria italicaOryza longistaminata49.5636.3290280forward
CNT3023479Setaria italicaPopulus trichocarpa15.7524.7983.1589forward
CNT30149302Setaria italicaBrachypodium distachyon46.0243.4893.46260forward

Expression of CNT30522907

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSTRRTEEGAVKCALRHFRRELVTRGLRFMAAAAGGDAPAYLRCRGGGG*

Sequence

>CNT30522907
GCAGTTTTTTGAAGTAACATAAACTCCTAGCACATAATTGATAGCAAGAGCACGAACTAGAGCGATAAGGAGTAAAAGACGGTACAACCACCATCAGATC
CCCGCGCAGCGCCTAGTCGATCTCCTGGAGGGAGGCACCGGTGGCGCCGTTCACCTTCTCGCGGGTGATCCTCTCGACGTGGATGACCCAGCGGCGGCGG
TAGACCTGCACCACCTTGCCCTCTCGGCCCTTGTAGGTGCCGCGCACCACCTGCACCTCGTCGTCCTTGCGGATCGGGACGGAGCGCACGTTGTACTTGT
GGCGGAGCTCCGTCGAGAGCGCCGCGGACATGAGCACGCGGCGGACGGAGGAGGGAGCCGTGAAGTGCGCCTTGCGGCACTTCCGGCGGGAGCTCGTGAC
GCGGGGGTTGCGCTTCATGGCGGCGGCGGCGGGGGGGGACGCTCCTGCTTACCTGAGATGCCGCGGCGGCGGCGGCTAGGGTTTTGGTGGGTGGAGGTGG
TGGAGGAATAGTGCTGGAGAAGGAAGGGGACAAGGTGAAGCAGTGGAGCAGGGGAAGGGAGGTGC