Detailed information on CNT30522807


BLAST search results

BLAST vs Swiss-Prot:
sp|O04133|SRC2_SOYBN, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690617Setaria italicaOryza sativa28.2717.9993.52216forward

Expression of CNT30522807

Peptides detected in this lncRNA

>peptide 1 (89 aa)
RGRVAVAGGLLRWVAVPVLRLRSGVGRRGAGAGGRVGCHWFTCLCRLARGWRVAGLGRISGCRRVGLAGGRIGGGSVPAGRLGDLAELV*

>peptide 2 (35 aa)
MVAAERSRGLLGGDGERLKRWIGSSKLIGLCCGSQF

>peptide 3 (83 aa)
AGAGSRSRRAAAVGSRTRTAAEERRRAPRCWGRRQGRLSLVHLPLPACPRLAGSRIGADKRLPARRPCRWADRRWERTRRPIG*

>peptide 4 (63 aa)
MWTSPTSRSPRARSARRSTWRDPAPLAGTVKRSVAFQVGFRPPVRSAWIRCRERGSPESDTTA*

Sequence

>CNT30522807
GGCGGGGGCGGGTAGCCGTAGCCGGCGGGCTGCTGCGGTGGGTAGCCGTACCCGTACTGCGGCTGAGGAGCGGCGTAGGGCGCCGCGGTGCTGGGGCCGG
CGGCAGGGTAGGCTGTCACTGGTTCACCTGCCTTTGCCGGCTTGCCCGAGGCTGGCGGGTAGCCGGATTGGGGCGGATAAGCGGTTGCCGGCGCGTCGGC
CTTGCCGGTGGGCGGATAGGCGGTGGGAGCGTACCCGCCGGCCGATTGGGTGACCTCGCCGAGCTTGTATGAGAAGTTGAGGACTCCCTGGGGCTTGGCG
GAGGAGATCTTGCGGACCTGGTAGGCGACGAACTTGGCGGGGACGGGGCCGTCGGGGGCGCCGGAGAGGAGCTCGGAGAGCGGGATGTGGACCTCGCCGA
CGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGTACGTGGAGGGATCCCGCGCCGCTGGCGGGGACGGTGAAGCGGAGCGTGGCGTTCCAGGTGGG
GTTCCGGCCGCCGGTGCGGTCGGCCTGGATCCGCTGCCGCGAGCGGGGGTCGCCGGAGAGCGACACCACGGCGTAGACCTCCATCTTGGAGAGCAGGTTC
ACCTCCTTGAGATCCTTGGCCGAGATCAGCGTCAGCTCCAGCGTCCTCGTCGCCATGGTTGCTGCTGAGAGATCCCGCGGACTTCTCGGTGGAGACGGGG
AGAGACTCAAGAGATGGATTGGTTCTTCGAAATTGATCGGTCTGTGTTGCGGATCGCAATTCGC