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Detailed information on CNT30522749


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M2T2|PP16A_ARATH, E-value = 7e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30455685Setaria italicaSaccharum spontaneum29.1828.0294.36408forward
CNT30579950Setaria italicaEchinochloa crusgalli38.9840.5892.84545forward

Expression of CNT30522749

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MFFLSSFWNRKRLKFGANQSKKQNKTVIHIYITVSASKMHNLIWS*

>peptide 2 (43 aa)
MVAAERSRGLLGGDGERLKRWIGSSKLIGLCCGSQFAKTWGIVS

>peptide 3 (63 aa)
MWTSPTSRSPRARSARRSTWRDPAPLAGTVKRSVAFQVGFRPPVRSAWIRCRERGSPESDTTA*

>peptide 4 (43 aa)
MSPIRSPPTAPPSSPAPSPIPKLFFFFCGFTACCWYPYPACGG*

>peptide 5 (39 aa)
RTLNVLSFIFLEQKEVEVRCKSEQKTKQNCDSYLHYRIS*

Sequence

>CNT30522749
AGAACTTTGAATGTTCTTTCTTTCATCTTTTTGGAACAGAAAGAGGTTGAAGTTCGGTGCAAATCAGAGCAAAAAACAAAACAAAACTGTGATTCATATT
TACATTACCGTATCAGCTAGTAAGATGCATAATTTGATTTGGTCCTGACAGTTAGGTGAGTAGTACAAACAAAACATATCACAAAGGAAAATCCAAAAAA
ACTGAAGACCTCTGCGGCGATATCCTCATCGGAGCGCTCTAGAAATCAAAGCCGCCGTCGTCGAACCCGGCGTCGTAGCCGGCATCGTACGCCGACGCGT
CCGACATCATGTCCCCGATCAGGAGCCCGCCGACGGCGCCTCCGAGCAGCCCGGCCCCGAGCCCCATCCCGAAGTTGTTCTTCTTCTTCTGCGGCTTCAC
GGCCTGCTGCTGGTACCCGTACCCGGCCTGCGGCGGGTAACCGTATCCGTACCCGGCTTGCGGCGGCGGGGGCGGGTAGCCGTAGCCGGCGGGCTGCTGC
GGTGGGTAGCCGTACCCGTACTGCGGCTGAGGAGCGGCGTAGGGCGCCGCGGTGCTGGGGCCGGCGGCAGGGTAGGCTGTCACTGGTTCACCTGCCTTTG
CCGGCTTGCCCGAGGCTGGCGGGTAGCCGGATTGGGGCGGATAAGCGGTTGCCGGCGCGTCGGCCTTGCCGGTGGGCGGATAGGCGGTGGGAGGTGAGTA
CGCGTCGGCCTTGGCGGCCGGCGGGTAGGCGGAGGGAGGCGGGTACGCATCGGCCTTGCCTGCCGGCGGGTAGGCGGAGGAAGGCGGGTAGGCGGCGGCC
GGCGGAGGCTGGGTGTAGGCGGACTGGGCGGGGGTGGGAGCGTACCCGCCGGCCGATTGGGTGACCTCGCCGAGCTTGTATGAGAAGTTGAGGACTCCCT
GGGGCTTGGCGGAGGAGATCTTGCGGACCTGGTAGGCGACGAACTTGGCGGGGACGGGGCCGTCGGGGGCGCCGGAGAGGAGCTCGGAGAGCGGGATGTG
GACCTCGCCGACGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGTACGTGGAGGGATCCCGCGCCGCTGGCGGGGACGGTGAAGCGGAGCGTGGCG
TTCCAGGTGGGGTTCCGGCCGCCGGTGCGGTCGGCCTGGATCCGCTGCCGCGAGCGGGGGTCGCCGGAGAGCGACACCACGGCGTAGACCTCCATCTTGG
AGAGCAGGTTCACCTCCTTGAGATCCTTGGCCGAGATCAGCGTCAGCTCCAGCGTCCTCGTCGCCATGGTTGCTGCTGAGAGATCCCGCGGACTTCTCGG
TGGAGACGGGGAGAGACTCAAGAGATGGATTGGTTCTTCGAAATTGATCGGTCTGTGTTGCGGATCGCAATTCGCAAAGACTTGGGGGATTGTTTCGA