Detailed information on CNT30522744


BLAST search results

BLAST vs Swiss-Prot:
sp|P12653|GSTF1_MAIZE, E-value = 7e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675196Setaria italicaSetaria viridis15.341.0798.87177forward
CNT30472257Setaria italicaSaccharum spontaneum7.6921.3486.5289forward
CNT3014272Setaria italicaZea mays17.2954.7987200forward
CNT30681876Setaria italicaTriticum urartu27.8332.9982.61322forward
CNT30363251Setaria italicaSorghum bicolor23.162388.06268forward
CNT30497720Setaria italicaDigitaria exilis16.5130.9691.62191forward
CNT30594623Setaria italicaEragrostis curvula11.9350.7486.23138forward

Expression of CNT30522744

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MINRKKKNITPLHLIRFYIEIILMSDQNASRQCKFDVCA*

>peptide 2 (43 aa)
MAHHSSTKPETSKQRGRTQIISHAPPALGEPLQAYGFIRAATF*

>peptide 3 (44 aa)
MAQRHFAIRQYFSYLGMFESCWLLLVKVSEQPMCLEKAEIPFLF*

>peptide 4 (46 aa)
MTSQDKLIKSQALGSLSTLVFICNIILNIKIIIIGLVQKNIEVRYK*

>peptide 5 (76 aa)
MVKVSKAEEVSSQVLVLGQARLVHLQHLLQLLKVVLHNLLVGGSPKHRTDEALEEDGVQHTGVLISLHLHPNIHHC*

Sequence

>CNT30522744
ATGGCACATCATAGCAGCACAAAACCCGAAACAAGCAAACAGCGAGGCAGAACTCAGATTATTTCCCACGCACCACCTGCACTAGGAGAACCACTTCAAG
CTTATGGCTTCATCAGAGCCGCAACCTTCTGAACAGATGGCCTCTCCATCAGGGTGGCAGAGACATGGTTAAGGTCAGCAAGGCTGAGGAAGTCTCCAGC
CAGGTACTTGTACTTGGTCAGGCGCGCCTCGTACACCTCCAGCACCTTCTTCAGCTTCTCAAGGTTGTCCTCCACAACCTTCTGGTCGGTGGTTCCCCCA
AGCATAGGACTGATGAGGCACTGGAAGAGGATGGCGTCCAGCACACAGGTGTACTGATTAGCCTCCACCTCCATCCAAACATCCACCATTGCTGACTCCA
CGAGATTGCCTTCCTTCAACAGCTCAGGTTTGTTTTTACGGGCTGCATACTTGCAAATTGCACGCGATTCTGATAGGAAACATAAGAACAAGTTAAAGAA
GATATAACATCATTGGTAGATACAAAAGGATTCTACAGGAGCATTCAACTGTCTAAAACCTCTCAGAAAGTGATGATAAATAGAAAGAAAAAAAACATAA
CACCTCTTCACTTGATTAGATTTTACATCGAAATTATCCTGATGAGTGATCAGAATGCAAGTAGACAGTGTAAGTTTGATGTGTGTGCTTGAATAATCTT
ACTGGATTCAAGTTTGCAAATTATCACTTCTTTGGAACAATACCCACTCATCACTAAGTGACACCGCATGACGAGCCAGGACAAGTTGATTAAAAGTCAA
GCATTGGGGTCCCTTTCGACTTTAGTTTTTATATGCAACATAATCCTAAATATAAAAATTATCATCATTGGACTGGTCCAAAAAAATATTGAAGTGCGTT
ACAAGTAGTTCCTATGGCACAACGACATTTTGCAATCAGACAGTATTTTTCATATTTAGGAATGTTTGAAAGTTGTTGGCTTCTTTTAGTCAAGGTCTCT
GAACAACCCATGTGCTTAGAAAAGGCTGAGATACCTTTTCTTTTTTAAAAGGAAAACTTTGAAGTGCTAACCTCGTCATATGTTATGAAACGGGTAATAG
TACCAAATAAACAAATAGTGACAACAACAATGTACAAGAAACAACTCAAAAGGATCT