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Detailed information on CNT30522718


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690525Setaria italicaOryza sativa29.3127.9195.83216forward
CNT30674795Setaria italicaSetaria viridis36.0960.3298.5266forward
CNT30629403Setaria italicaVigna unguiculata30.6631.3989.82226forward
CNT30188029Setaria italicaSecale cereale28.6330.5895.73211forward
CNT30224983Setaria italicaHordeum vulgare28.6334.5994.79211forward
CNT30555034Setaria italicaOryza glaberrima30.9421.6395.18228forward
CNT30441097Setaria italicaAegilops tauschii28.6335.4695.26211forward
CNT30456340Setaria italicaSaccharum spontaneum35.9640.1592.08265forward
CNT30129910Setaria italicaCorymbia citriodora29.1734.1394.88215forward
CNT30685532Setaria italicaTriticum urartu28.6322.4996.21211forward
CNT30721767Setaria italicaTriticum spelta28.6328.195.73211forward
CNT30371011Setaria italicaOryza glumipatula30.9435.0895.18228forward
CNT30149001Setaria italicaBrachypodium distachyon26.5947.4692.35196forward
CNT30115779Setaria italicaOryza nivara28.0939.4396.62207forward
CNT30603587Setaria italicaOryza punctata28.0940.7595.17207forward

Expression of CNT30522718

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MACTKNPNMENMARRPFLSSLTLSSAKASGSSASPSGLGLPRARRCPSRSHRGTRRSGSSGARRRAGRGTGRGRARTTGCRTPRASAWRHRSCAL*

>peptide 2 (89 aa)
MPILAHSLAGDEVGGVGPGVVVDGVGEVVGEVLQGPLAGDDGLHEEPEHGEHGEAAVLELLDLELGEGLGVVGEPQRARVAESPAVSQP*

>peptide 3 (83 aa)
VHISLIRSRTCVQIHYWYNNLWSQASFLHKYSYTLQYIRIHTSTATPPPAGRFTSPCASSTHAHPRSLTCRGRSWWRRPRRCC*

>peptide 4 (76 aa)
AYFIDPVQNMRTNTLLVQQPVVPGFLPSQILVHVAVHTNTYVYGDPTPGRSLHLAVRVIHPCPSSLTHLPGTKLVA*

>peptide 5 (38 aa)
MRPSPNTSLVLAAGLPTSAREVRAMVAAAISIRSLLLL*

Sequence

>CNT30522718
GTGCATATTTCATTGATCCGGTCCAGAACATGCGTACAAATACACTACTGGTACAACAACCTGTGGTCCCAGGCTTCCTTCCTTCACAAATACTCGTACA
CGTTGCAGTACATACGAATACATACGTCTACGGCGACCCCACCCCCGGCCGGTCGCTTCACCTCGCCGTGCGCGTCATCCACCCATGCCCATCCTCGCTC
ACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCCAGGGGCCCCTTGCCGG
TGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTC
GGCGAGCCCCAGCGGGCTCGGGTTGCCGAGAGCCCGGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGA
GCGGGCCGAGGTACAGGACGCGGTCGGGCCCGTACCACGGGCTGCCGGACGCCGCGGGCTTCGGCTTGGCGCCACCGGTCTTGCGCATTGTGATGCGGCC
CTCGCCGAACACGTCCCTGGTGCTGGCCGCCGGCTTGCCGACGAGCGCACGGGAGGTGAGAGCCATGGTGGCGGCGGCCATCTCGATCAGATCACTCCTC
TTGCTGTGATGCTCTGCTCTGTGTTTGTGTTCTGGTG