Detailed information on CNT30522698


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674816Setaria italicaSetaria viridis35.8761.51100179forward
CNT30454515Setaria italicaSaccharum spontaneum39.8875.9587.94199forward

Expression of CNT30522698

Peptides detected in this lncRNA

>peptide 1 (92 aa)
QMITHITCRSVSYKGSVQIFFRETVGETKTEKHWETKENFTLAEARLENTVSALPEGTFYQCVTAQKAKKSSNNPLQFIISKLTIHPSGSPV*

>peptide 2 (33 aa)
MSTTAAKMEVTTPRRPSIRSRIRRSAKMRKITT*

>peptide 3 (47 aa)
ANDHTHNLQVSFLQRISTNFFQRNSGRDKNRKTLGNKRKLHTCRGTT*

Sequence

>CNT30522698
GCAAATGATCACACACATAACTTGCAGGTCAGTTTCTTACAAAGGATCAGTACAAATTTTTTTCAGAGAAACAGTGGGAGAGACAAAAACAGAAAAACAT
TGGGAAACAAAAGAAAACTTCACACTTGCAGAGGCACGACTTGAGAACACCGTGTCAGCTCTCCCAGAAGGTACATTTTATCAGTGTGTGACAGCGCAAA
AGGCAAAGAAAAGCAGCAACAATCCGCTTCAATTCATCATCAGCAAACTAACAATCCATCCATCAGGCAGCCCCGTTTAACCGTTTTTCAGGCTGCTTGA
CACGGCCGCAGAAGATCTTGCGGCCGTTGCCGTGGAGGGCCAGCAGCGAGATGAGCACCACCGCGGCGAAGATGGAGGTGACGACGCCCAGGAGGCCCAG
CATCCGGAGCCGGATCCGACGCTCTGCGAAGATGAGGAAGATCACCACGTAGATGGCCTCGATCAGCGACCCCGTCCCGTTGATCGTCGTCACCAGGAT