Detailed information on CNT30522677


BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 2e-76

BLAST vs NONCODE:
NONPOPT000585, E-value = 5e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674420Setaria italicaSetaria viridis28.1869.06100250forward
CNT30188823Setaria italicaSecale cereale37.5439.2788.59333forward
CNT30303722Setaria italicaTriticum aestivum43.5263.789.38386forward
CNT30225924Setaria italicaHordeum vulgare38.3360.3988.53340forward
CNT30441436Setaria italicaAegilops tauschii27.2847.7389.26242forward
CNT30667060Setaria italicaTriticum dicoccoides38.954.3388.99345forward
CNT30310308Setaria italicaCamelina sativa9.0234.6386.2580forward
CNT3014405Setaria italicaZea mays32.1352.7893.68285forward
CNT30218287Setaria italicaKalanchoe fedtschenkoi31.6854.1483.63281forward
CNT30686069Setaria italicaTriticum urartu34.8436.3190.61309forward
CNT30363315Setaria italicaSorghum bicolor59.1963.2595.05525forward
CNT3055147Setaria italicaAmborella trichopoda32.1329.4482.81285forward
CNT30574675Setaria italicaOryza barthii20.1839.6993.3179forward
CNT30594881Setaria italicaEragrostis curvula9.2422.2289.0282forward

Expression of CNT30522677

Peptides detected in this lncRNA

>peptide 1 (33 aa)
WHREGQSCQCRWFAVHRREAPKNTVTTAVTQEL*

>peptide 2 (54 aa)
MNLLPPFLRSRLMVIIPGLKSKFSFTILRISLSGILPVPYESTNTDRGSGTPMA*

>peptide 3 (70 aa)
LASRGTVLPMPLVCSAQEGGSKEYSNDSSNTGIMIDQNCKSLGSFGSTDSKKGEKQKRKKIPDDQTSTGR*

>peptide 4 (49 aa)
MLVLVQVSQATLLSGSCARHASRTASDTWSHSLSGCPSRKRRRRGGRMCG

Sequence

>CNT30522677
TTGGCATCGAGAGGGACAGTCTTGCCAATGCCGTTGGTTTGCAGTGCACAGGAGGGAGGCTCCAAAGAATACAGTAACGACAGCAGTAACACAGGAATTA
TGATAGATCAAAACTGCAAATCTCTCGGCAGTTTCGGTAGTACAGACTCGAAAAAGGGGGAGAAACAAAAAAGGAAAAAGATACCGGACGACCAAACTAG
TACAGGTAGATGATAAGCACGGAGACGGACACTCTTCTTCTCTAAGCGGACGCCTTGTCGAACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGTGT
CGTCGCGCCCGAAGTGACCGTAGGCCGCGGTCTTGATGAACCTGTTGCCGCCCTTCTTGAGGTCGAGGTTGATGGTGATCATCCCGGGCCTGAAGTCGAA
GTTCTCCTTCACGATCTTGAGGATCTCCTTGTCGGGGATCTTGCCGGTGCCGTACGAGTCGACGAACACCGACAGGGGCTCGGGAACGCCGATGGCGTAG
GACACCTGCACGAGGCAGCGGCGGGCGAGGCCGCTGGCCACGATGCTCTTGGCCGCCTGCCTGGCGATGTAGGCGCCGCTGCGGTCAACCTTGGTGGGGT
CCTTTCCGGAGAAGGCACCACCGCCGTGGGCTCCCCAGCCGCCGTAGGTGTCGATGATGATCTTGCGGCCGGTGTCGCGTACAATCTTCTCGTAGTCGAC
GGTGGCCTTGGTGGTGATCTCGCCGAACACCATCACCATGTTGGTCTTGGTGCAGGTCTCGCAGGCCACCTTGCTGTCGGGGTCCTGCGCCAGGCACGCG
TCCAGGACGGCGTCCGACACCTGGTCGCACAGCTTGTCGGGGTGCCCCTCGAGAAAGAGGAGGAGAAGAGGCGGACGGATGTGTGGC