Detailed information on CNT30522654


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 7e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524694Setaria italicaPhaseolus vulgaris47.2260.580.59170forward
CNT30363833Setaria italicaSorghum bicolor58.8924.0199.06212forward
CNT30620290Setaria italicaCajanus cajan18.0621.7489.2365forward
CNT30360397Setaria italicaLactuca sativa31.3927.3681.42113forward
CNT3099936Setaria italicaOryza rufipogon58.6142.0393.84211forward
CNT30574872Setaria italicaOryza barthii58.6135.1194.31211forward
CNT30557967Setaria italicaPanicum hallii58.6142.1297.63211forward

Expression of CNT30522654

Peptides detected in this lncRNA

>peptide 1 (90 aa)
GGAGALEELDEDLAERAVHLVCGGLELGVAHEVGLVVVRLELLQQRVELRLVELLVDLGVEEALHLVEVGGAGPRRSWRTPRGGGALRRG*

>peptide 2 (36 aa)
AVQERSRNSTKIWRSGPSILSAAALNSGLRTKWVWL*

Sequence

>CNT30522654
GGCGGTGCAGGAGCGCTCGAGGAACTCGACGAAGATCTGGCGGAGCGGGCCGTCCATCTTGTCTGCGGCGGCCTTGAACTCGGGGTTGCGCACGAAGTGG
GTCTGGTTGTAGTCCGTCTTGAACTCCTGCAGCAGCGCGTCGAACTCCGCCTGGTTGAGCTGCTTGTTGATCTCGGCGTTGAAGAGGCGCTCCATCTCGT
CGAAGTCGGTGGGGCAGGCCCGCGGAGGTCTTGGCGGACACCCCGCGGTGGTGGTGCATTGCGGCGGGGTTGAGGAGGGAGAGCTCCATGGCAGCGGAGG
CCATTGGTGCCGGCGGCGACGTGTGGCTCGGCGAGCGCTGGGCAGCGGGAGCGAGCTGAG