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Detailed information on CNT30522590


BLAST search results

BLAST vs Swiss-Prot:
sp|P37832|TBB7_ORYSJ, E-value = 9e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696010Setaria italicaOryza sativa5.0230.4386.984forward
CNT30677823Setaria italicaSetaria viridis5.836.8810097forward
CNT30727960Setaria italicaCorchorus capsularis8.3727.9485140forward
CNT30488155Setaria italicaOlea europaea4.9620.3486.7583forward
CNT3047350Setaria italicaPrunus dulcis5.3839.4787.7890forward
CNT30397469Setaria italicaTriticum turgidum19.6827.8692.4329forward
CNT30213619Setaria italicaHelianthus annuus5.9831.5585100forward
CNT30684516Setaria italicaTriticum urartu10.7768.4498.33180forward
CNT30721065Setaria italicaTriticum spelta5.6842.4188.4295forward
CNT30368464Setaria italicaSorghum bicolor19.6840.0294.22329forward
CNT30621647Setaria italicaCajanus cajan5.3238.5386.5289forward
CNT30573622Setaria italicaVitis vinifera5.0230.8884.5284forward

Expression of CNT30522590

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGGTIPWRQSQFSASLRTTSRTESMSSAPSV*

>peptide 2 (63 aa)
MTVKTKNYYIWPAMQITKGTSPKCQLETDFNCIHKHPRNPRSGLALPPPRAAAPGSKPNRLAP*

>peptide 3 (73 aa)
MPCSSQITSQNLAPIWFPHCPPWMCRISLMADAAFAGDFAGAAGVGGGAARVWVGCLVVRVCCGAAACGLGED*

Sequence

>CNT30522590
CCAGCATGCAAATGTAAAAGGCAGCCTTGGACTACACAGGTTCAAAAGATACAGGAGCAACTAAAGGTGTCAAAGAGCTAGCAATATGTCAGAACTGCGA
CACATTAAACGAGACCAGAGTTTGTGTGCAATCATCAATCATGTTGCAACAGTTAAGTGATATTTGAATTGAGTCAACATCACAACATACTGCCACCATG
CTTTGGTAGGCCATGAACCTATCTTGACATGCTACCAGAAATTTAATTTGGGCATGACATAGTTTATAGCATATCAAACAATAATCATAGTGATTAGATT
ACAAAGATACAAAGTTCAGCCCTTATTTATTCACCAAGAAGACAAGGGATCTATTTCGTCTGGTGTTTGGCAAAAGAATTCAGTCCAGCTATGGCACAAT
ATTTAATTTAATTTTTTAATAGAAACAGGTCATTAGCAGTTGTAGGGTGCCAGAGTGGAACTCCATGCTAACACATCCAACACTCAAGTTACAGGAATAA
AATATCCATCCTACCGACAGTTGATGTCAGTACAGCTACTTAGCCCAGAAGAAGCTACAGGAGTTCAACCAAAACATGAATTCACCAGAGCATATTCATG
AAAACCAACATATTAACTAGCACAGCTATACAAAGTTCCATCTTGACAGTGCCAATATAACCGCAAATAAACCATAAAAACACCACAACTAACTACTATA
GGTACAATTTTCCTTCCAAGTTACTATCTCACTCAGGCTGTACAAACCTACTGAATAACAGAAATGAACAAAAAACGTCAGTTCATCATGAAAGGTAGAA
ATTAGCCAGACTCGCAACAACCAGCAATCCCTTTCAATTCATTCACAGATATAACAACCTACCTAGAGACTAAATGACTAACAAATAGCACAACATCACT
TAGCAAATTGATCAGATCATTTGGTGGAACATGACAGTGAAGACGAAAAATTACTACATATGGCCAGCAATGCAAATAACAAAGGGTACCTCGCCGAAAT
GCCAATTGGAGACAGATTTTAATTGCATCCACAAACACCCCCGGAACCCTAGATCTGGACTAGCTCTACCTCCCCCACGTGCTGCCGCTCCCGGATCTAA
GCCTAACCGGCTAGCCCCTTAACCCCAAAGGAAAATCTAACCAAATCAGAGAGCGCGAGGGGATGGGAATGGGATGGGCGGAACAATACCCTGGAGGCAG
TCGCAGTTCTCGGCCTCCTTGCGGACGACGTCGAGGACGGAGTCGATGAGCTCGGCGCCCTCGGTGTAGTGTCCCTTGGCCCAGTTGTTGCCGGCGCCGG
ACTGGCCGAAGACGAAGTTGTCGGGGCGGAAGATCTGGCCGAAGGGGCCCGAGCGCACGGAGTCCATGGTCCCTGGCTCGAGCTGGAGGTCCGAGTCCCC
CGCGTAGCGGCCCGTGGCGTCGATGCCGTGCTCGTCGCAGATCACCTCCCAGAACTTGGCGCCGATCTGGTTCCCGCACTGCCCGCCCTGGATGTGCAGG
ATCTCCCTCATGGCTGACGCCGCCTTCGCCGGTGACTTCGCCGGAGCGGCTGGGGTCGGAGGGGGAGCGGCGCGGGTGTGGGTCGGGTGCCTGGTGGTGC
GCGTGTGCTGCGGGGCTGCGGCTTGTGGTTTGGGTGAGGACTGATTTGAAATGGTGCTTTATGCTGTTGGCG