Detailed information on CNT30522541


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 4e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695553Setaria italicaOryza sativa52.845.9594.9255forward
CNT30678616Setaria italicaSetaria viridis53.8353.28100260forward
CNT30370885Setaria italicaOryza glumipatula52.836.7494.9255forward

Expression of CNT30522541

Peptides detected in this lncRNA

>peptide 1 (31 aa)
FHASPPRSPRKPDYSNKITYRSTLHQPPNTS*

>peptide 2 (48 aa)
SMHHLHDHQENLIIVIKLHIDRPSINHPTPAKRKRWMRSLRCRRCSCR*

>peptide 3 (37 aa)
MSKVFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

Sequence

>CNT30522541
GTTCCATGCATCACCTCCACGATCACCAAGAAAACCTGATTATAGTAATAAAATTACATATCGATCGACCCTCCATCAACCACCCAACACCAGCTAAGAG
AAAGAGATGGATGAGATCACTTAGATGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGCC
CCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGGACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTA
GTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGGAGGTGGCGCGTCGCGGCGGAGGCTTGCGTG
GCCATGGCCATCGTCGGCTTGATTCTCGGACGAGCTGGTGCGGCTTCTTGGAGCAAAGCTAAGAGCAAGATGGCGAGGAGAGA