Detailed information on CNT30522472


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-40

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Setaria italicaOryza sativa51.9163.1994.39285forward
CNT30678126Setaria italicaSetaria viridis48.2784.39100265forward
CNT30549690Setaria italicaIpomoea triloba29.8739.0584.76164forward
CNT30288901Setaria italicaTriticum aestivum50.4658.9495.31277forward
CNT30387206Setaria italicaTriticum turgidum50.4649.6495.31277forward
CNT30553196Setaria italicaOryza glaberrima52.0951.2595.45286forward
CNT30441215Setaria italicaAegilops tauschii50.465094.95277forward
CNT30239976Setaria italicaAvena sativa52.4657.1493.75288forward
CNT30143346Setaria italicaLolium perenne51.1848.292.53281forward
CNT30720165Setaria italicaTriticum spelta26.0530.4992.31143forward

Expression of CNT30522472

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRFTPPLLANLRIAGFVMPWMLSRSTFRWRFAPPLPRPLPPLPRPDMADAAKTWSSPEAGGFEMDLCGRRFGDF

Sequence

>CNT30522472
ACCAAATTATACCTACGAACATCCATTCATTCAATTGATAGGCTTCCAATTCTCCATTACAACCATAAACACCTATTAAGTTAACACCACAACGCAGCTA
GACACAGGACAGAACCCAACACAGCAACTCCCCTAAATCCATCAGAAACCCTAGCTCGAGCCTGCAGGACGCGGACGGGGTCAAGGCTCAGCCGCCGAAG
CCGTAGAGTGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTAACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGC
GAGTCTCCTCGTAGATCAGGCCGGAGATGCGCTTCACGCCACCCCTCCTCGCCAACCTCCGGATCGCCGGCTTCGTGATGCCCTGGATGTTGTCGCGGAG
CACCTTCCGGTGGCGCTTCGCGCCGCCCTTGCCCAGGCCCTTGCCTCCCTTGCCGCGGCCCGACATGGCTGATGCTGCGAAGACTTGGAGCTCGCCGGAA
GCAGGAGGATTCGAGATGGATTTGTGCGGACGAAGATTTGGTGATTTTC