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Detailed information on CNT3052246


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318271Amborella trichopodaCorylus avellana22.3227.1279.55269forward
CNT30546681Amborella trichopodaIpomoea triloba21.8355.9682.51263forward
CNT30701199Amborella trichopodaQuercus lobata21.5823.5981.92260forward
CNT30616210Amborella trichopodaSesamum indicum21.3320.5479.77257forward
CNT3069058Amborella trichopodaQuercus suber21.6629.8378.54261forward
CNT30198310Amborella trichopodaPisum sativum22.5734.4781.99272forward
CNT30504865Amborella trichopodaNicotiana attenuata15.8537.382.2191forward
CNT30712284Amborella trichopodaGlycine max20.1751.782.72243forward
CNT3092650Amborella trichopodaSolanum tuberosum16.150.5279.38194forward
CNT30565712Amborella trichopodaActinidia chinensis6.3925.7585.7177forward
CNT3086283Amborella trichopodaVigna radiata20.3316.4981.22245forward
CNT30172429Amborella trichopodaTrifolium pratense22.4141.7381.85270forward
CNT3082467Amborella trichopodaBrassica juncea22.4137.6681.48270forward
CNT30611328Amborella trichopodaArabis alpina11.3730.0481.02137forward
CNT30211420Amborella trichopodaHelianthus annuus22.4154.4481.85270forward
CNT30619612Amborella trichopodaCajanus cajan15.143.4481.32182forward
CNT30360323Amborella trichopodaLactuca sativa19.6767.7179.75237forward
CNT3024855Amborella trichopodaPopulus trichocarpa22.3245.8381.78269forward
CNT30331117Amborella trichopodaDioscorea rotundata22.1628.1978.65267forward
CNT3050826Amborella trichopodaCucumis sativus10.1235.7882.79122forward

Expression of CNT3052246

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MLSVGHSIPDNVFQKNLQNPTGFFIYQTADTLHSTPSSQPTNGRFCDPLNVIT*

>peptide 2 (53 aa)
MDFMREIQRDRTNRKLTNENQINPKMEINEQKNEIEKKTRIRNHSIIRKIKKG*

>peptide 3 (36 aa)
MSVKIRMRRKTTGQAAFYRAYTTSMAVTVLRLACSV*

>peptide 4 (31 aa)
MIDNCRCQIRKIQEENKNEHYTFISVNVSEN*

>peptide 5 (31 aa)
FPKLNMYIITRGTTITNPQLPYLKPLQIDLT*

Sequence

>CNT3052246
TTTCCCAAGCTCAATATGTATATAATTACTAGAGGAACAACTATAACTAATCCACAACTACCCTATTTGAAGCCCTTACAGATTGATTTGACTTAATCAA
TGATAGATAATTGCAGATGCCAAATTCGGAAAATCCAAGAGGAAAATAAAAATGAACATTACACTTTCATATCAGTAAATGTCAGTGAAAATTAGAATGC
GCCGAAAAACTACAGGGCAAGCAGCCTTCTACAGAGCATACACCACATCCATGGCGGTCACAGTCTTACGCCTGGCATGCTCAGTGTAGGTCACAGCATC
CCTGATAACGTTTTCCAGAAAAATCTTCAGAACCCCACGGGTTTCTTCATATATCAGACCGCTGATACGCTTCACTCCACCCCTTCTAGCCAACCTACGA
ATGGCCGGTTTTGTGATCCCCTGAATGTTATCACGTAGAACTTTCCTGTGACGCTTAGCTCCTCCTTTTCCCAAACCCTTGCCTCCCTTTCCACGACCTG
ACATCTTGGGGTCTCCCTGATATTTCAAACACCTGTTAGTCAAAACAGGAAAATGGTAAAAGGGCTATGGATAAAACAAGAGGAAAATAAAAATAAAAAA
TCTAAGGTATCAAGAAAGTGAAGAAGCTGAAATACAAGACGCCTAAGACAAAAAGCTTGGAGAAGGAAGGACATAAAATGATCAGTGTACATTAAAAGTG
GAATCTACACACGAATTTCAGTATTGAGAAATCAGAGACAATGGAGATTCAAAAGAACAATTCAGCAACCCTAACCCTTAAGCACGATGAGAAAAAAACA
AAACGAACAAATCAAACCTAAAAAGTAGGAAACCCTAACTCTAAAAAAAGATATGTAGGAGACATAACTACAAGCCAAAAACCAAGATTTCAACCCAAAT
GTTGGAAAGAATAATTGAATACAAACTGATACCAACAATAAATTAATTTCCACCAAACCCAAAAGCCATATGCAGAGATATGGATTTCATGCGAGAAATT
CAACGAGATCGAACGAACAGGAAATTAACGAACGAAAATCAAATAAATCCTAAAATGGAAATAAATGAACAAAAAAATGAAATTGAAAAAAAAACACGCA
TAAGAAATCATAGCATAATTCGAAAAATAAAAAAAGGGTAAAGAGAAATGAAAATTTTACAGGAATTGAAAGAGAAACGCGCGAAGAAAGTGGGAAACGT
GGAAT