Detailed information on CNT30522452


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9T0I5|PRP4_ARATH, E-value = 3e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696585Setaria italicaOryza sativa43.4797.0282.59293forward
CNT30180970Setaria italicaSecale cereale21.3651.2584.03144reverse complement
CNT30309159Setaria italicaTriticum aestivum27.8932.9282.45188forward
CNT30220948Setaria italicaHordeum vulgare26.4120.9782.02178forward
CNT30555228Setaria italicaOryza glaberrima45.9945.9379.35310forward
CNT30437233Setaria italicaAegilops tauschii30.1226.8581.28203forward
CNT30251661Setaria italicaAvena sativa24.7815.5684.43167forward
CNT30659258Setaria italicaTriticum dicoccoides16.1751.4288.99109forward
CNT30371172Setaria italicaOryza glumipatula17.5128.3783.05118forward
CNT30109906Setaria italicaOryza longistaminata34.1231.7284.35230forward
CNT30103605Setaria italicaOryza rufipogon46.1446.0181.35311forward
CNT30577832Setaria italicaOryza barthii46.1451.4979.42311forward
CNT30117627Setaria italicaOryza nivara46.1447.3481.99311forward
CNT30551666Setaria italicaOryza brachyantha35.6126.1285240forward

Expression of CNT30522452

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MHAVPAAPSVAKYAGLTGMIYSVLSRRMVDRSWLWLPVHRGSRRVVFRRRGGGTPALACAQERGGTPALASCGNGRGSAS*

>peptide 2 (70 aa)
MATKVPPDMGAILEGSWPGQGAFAALWSCAWQSAPWRSAARGTLKAPELWSSLTALVSYSPLVSLHLIAT*

>peptide 3 (99 aa)
MVEEVLLDRGAEERGRALRGRVVRLAGDGDEGAARHGRDPGGLLAGAGRVRGAVELRVAVGAVEVGGEGDAEGSGALELADGLGLVLAVGVLALDRHLKT

Sequence

>CNT30522452
ACACTGACGAAGAAACAAGATACGCATCCCGCTTTTAATTAAAAGCTAAACAACGATCACAAGTACAACCTCACAACTACTCAACATTTATTCTCCCTTC
GTGCACTAGTAATAAGACATAAGTACAAATATAAATAACTAATCGCAAGCCTCATGCATGCCGTCCCAGCTGCGCCGTCCGTGGCAAAATATGCTGGACT
CACGGGAATGATTTATTCAGTGCTCAGCAGGAGGATGGTAGATCGGAGTTGGCTTTGGCTGCCCGTACACCGGGGTAGTAGGAGGGTGGTATTCCGGCGT
CGGGGGGGTGGTACACCGGCGCTGGCTTGTGCTCAGGAACGGGGTGGTACTCCGGCACTGGCTTCTTGTGGAAATGGTCGAGGAAGTGCTTCTTGATCGG
GGCGCAGAGGAACGCGGACGCGCACTCCGCGGACGGGTAGTGCGTCTTGCCGGGGATGGCGACGAAGGTGCCGCCAGACATGGGCGCGATCCTGGAGGGC
TCCTGGCCGGGGCAGGGCGCGTTCGCGGCGCTGTGGAGCTGCGCGTGGCAGTCGGCGCCGTGGAGGTCGGCGGCGAGGGGGACGCTGAAGGCTCCGGAGC
TCTGGAGCTCGCTGACGGCCTTGGTCTCGTACTCGCCGTTGGTGTCCTTGCACTTGATCGCCACCTGAAGACCT