Detailed information on CNT30522444


BLAST search results

BLAST vs Swiss-Prot:
sp|P27494|CB23_TOBAC, E-value = 7e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30684690Setaria italicaTriticum urartu58.7754.4287.25345forward
CNT30108138Setaria italicaOryza longistaminata59.2842.9688.22348forward
CNT30103236Setaria italicaOryza rufipogon59.2835.2688.51348forward
CNT30574663Setaria italicaOryza barthii59.2842.2888.22348forward
CNT30499073Setaria italicaDigitaria exilis69.6854.988.26409forward

Expression of CNT30522444

Peptides detected in this lncRNA

>peptide 1 (73 aa)
SGTSRQLLAGLVWSDLKSSRAQSNTLARATTTRLLTSRGHITCRGRSWWRTPMRCWRRGRRRGRRGSRWVPCR*

>peptide 2 (77 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGISGNTHPSAPSMAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30522444
CGTCGGGCACGTCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACG
CCTACTCACGAGCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGT
TCTCGATGGGTCCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTC
GGCGGCGGTGTCCGGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCGCGGTTGCGCGCGAAGGTC
TCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGGCCTGGCCGAGGAAGCTGGTGGTCTGGTGGAGCGCCG
ACGCGGCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGATTGTTTTCGGCTGATCGAGTGGTGG