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Detailed information on CNT30522442


BLAST search results

BLAST vs Swiss-Prot:
sp|P13192|PSAF_HORVU, E-value = 1e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678189Setaria italicaSetaria viridis18.0464.19100147forward
CNT30525128Setaria italicaPhaseolus vulgaris12.7624.1385.58104forward
CNT30187643Setaria italicaSecale cereale20.7415.9689.35169forward
CNT30298665Setaria italicaTriticum aestivum19.1424.1192.31156forward
CNT30224070Setaria italicaHordeum vulgare5.6420.6397.8346forward
CNT30394054Setaria italicaTriticum turgidum20.9817.2989.47171forward
CNT30664845Setaria italicaTriticum dicoccoides19.1426.0492.31156forward
CNT30137478Setaria italicaLolium perenne7.9825.5993.8565reverse complement
CNT309319Setaria italicaZea mays38.7757.8896.52316forward
CNT30684883Setaria italicaTriticum urartu19.1425.9192.31156forward
CNT30349302Setaria italicaEragrostis tef19.1428.1194.87156forward
CNT30148341Setaria italicaBrachypodium distachyon17.0647.4493.53139forward
CNT30579037Setaria italicaEchinochloa crusgalli2017.2596.32163forward
CNT3040196Setaria italicaMarchantia polymorpha10.1829.1284.3483forward

Expression of CNT30522442

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNPLGRSRDASSTSMMISLMAGFFSPLMAMR*

>peptide 2 (42 aa)
MVALMARAGALSGAYLLSEVVSFLIEFFSRLANALDSLHGGR*

>peptide 3 (39 aa)
MRPARALGVGGAEEKETTTSGIGRRELGFGIRKKRAWDKG

Sequence

>CNT30522442
CTCTGCTTTTTTGCTCTAATTAATGGAGAACTGATACCTCTGCACTGACGGCTATAATATGCAAAATGGCAACGCAATGCAAAAATGAAAATGGTTCTCA
AGAATTTTCAAGAAGGTGAATACACATAAGAGAGAGGTACAGTTATACAAGGCTGCAACGGGCCAGATGAACCCCCTGGGGAGGAGCCGCGACGCGAGCT
CGACGTCGATGATGATCTCCCTCATGGCGGGCTTCTTCTCGCCGCTGATGGCGATGAGGTAGCTCCTGCCGACCCACCCGATCCACCCGGCGATGTAGAG
GAAGAGCAGGCCGAACTTGCCGTAGTTCTCGAAGCGGCGCTTGGTCTTCTCGATGGTGGCGTTGATGGCGAGGGCGGGGGCGCTGTCGGGGGCGTACTTA
TTGAGCGAGGTGGTGAGCTTCTTGATCGAGTTCTTCTCGCGCTTGGCGAACGCCTTGGACTCCTTGCACGGGGGGAGGTAGCGGCGGAGGAGAGGAGGAC
GGAGGACAGCGCCAGCGCGGCGGAGAAGGTCTTGACGGAGGAGGCGAGCGAGACGCTGCTGCCGTTGCTGCCGTCGCCGCCGGTGGCGGAGCAGGCCACG
GAGAGGCGCGCGCGGGGCAGGCGCGGCTTGGCGGCGAAGGCGGCCGTGGAGGAGGCGGCGAGGGCGGCCATCTCTGCTCTGCTGCTGGTGCGGATGCGTC
CGGCGCGCGCGCTTGGCGTGGGTGGAGCTGAGGAGAAAGAGACGACGACCTCTGGGATCGGGCGGCGCGAGCTGGGATTTGGGATCAGAAAGAAACGAGC
TTGGGATAAGGGGCG