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Detailed information on CNT30522398


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 7e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696263Setaria italicaOryza sativa56.852.888.19576forward
CNT30589591Setaria italicaMusa acuminata39.4570.9289400forward
CNT30554923Setaria italicaOryza glaberrima56.852.0888.37576forward
CNT30116676Setaria italicaOryza nivara56.6154.3690.42574forward

Expression of CNT30522398

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

>peptide 2 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

>peptide 3 (53 aa)
MVMRPPASAAAAGRETRAWPRKLVVWWSADAAIFCVSGEHDGAAAYWSVRLFSA

Sequence

>CNT30522398
TGACGGTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACG
TCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGA
GCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTTCTCGATGGGTCCCTTGCCGGTGACGATGGCC
TGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCGAGGCCCA
GCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGTCCCTCCCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGACCTG
GCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAAC
CACACCGCCTCGCCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATCACCTCCA
GCTCGCGGTTGCGCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGCGTCTG
CTCCGAGAACGGGCCCAGGTACTTGGGGCGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGGCGGCGGCGGGGCGGGAGACCAG
GGCCTGGCCGAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGA
TTGTTTTCGGCTGA