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Detailed information on CNT30522345


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 1e-84

BLAST vs NONCODE:
NONMTRT000178, E-value = 1e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Setaria italicaEucalyptus grandis43.692.1185.93327forward
CNT30316147Setaria italicaCorylus avellana39.4739.7384.46296forward
CNT30703138Setaria italicaQuercus lobata29.0741.683.49218forward
CNT30499549Setaria italicaCoffea canephora27.7342.4579.81208forward
CNT30615836Setaria italicaSesamum indicum19.4738.1284.25146forward
CNT3021362Setaria italicaCitrullus lanatus33.0738.180.65248forward
CNT30729539Setaria italicaCorchorus capsularis36.2740.4881.25272forward
CNT3068683Setaria italicaQuercus suber29.0744.3183.49218forward
CNT30524728Setaria italicaPhaseolus vulgaris33.7346.8580.24253forward
CNT30486152Setaria italicaOlea europaea39.0732.3879.18293forward
CNT30506399Setaria italicaNicotiana attenuata35.3380.0680.38265forward
CNT30636701Setaria italicaCapsicum annuum20.2736.9882.89152forward
CNT30182233Setaria italicaSecale cereale54.866.0885.16411forward
CNT30289293Setaria italicaTriticum aestivum15.7338.8289.83118forward
CNT30223417Setaria italicaHordeum vulgare29.4797.3691.4221forward
CNT30590847Setaria italicaMusa acuminata53.3387.5381400forward
CNT3084565Setaria italicaVigna radiata22.6710.0680.59170forward
CNT30539234Setaria italicaBrassica napus30.2724.8182.38227forward
CNT30510868Setaria italicaSolanum lycopersicum828.8588.3360forward
CNT30143836Setaria italicaMedicago truncatula21.0727.182.91158forward
CNT30244810Setaria italicaAvena sativa54.850.8784.91411forward
CNT30261302Setaria italicaBrassica rapa30.2743.9182.82227forward
CNT30447453Setaria italicaSaccharum spontaneum60.5379.2395.15454forward
CNT30134072Setaria italicaLolium perenne54.856.6186.13411forward
CNT3066796Setaria italicaLeersia perrieri4688.6984.93345forward
CNT30653881Setaria italicaRosa chinensis45.7332.1281.34343forward
CNT30718631Setaria italicaMalus domestica golden31.240.7783.33234forward
CNT30343308Setaria italicaEragrostis tef36.5310090.88274forward
CNT30477892Setaria italicaArabidopsis halleri25.8718.1380.93194forward
CNT30363710Setaria italicaSorghum bicolor26.2733.5686.8197forward
CNT30595456Setaria italicaOryza meridionalis53.8770.8885.89404forward
CNT30360575Setaria italicaLactuca sativa28.2735.1683.02212forward
CNT30424172Setaria italicaPapaver somniferum21.0722.6480.38158forward
CNT30570592Setaria italicaVitis vinifera25.0758.284.04188forward
CNT30645151Setaria italicaCannabis sativa29.4723.1982.35221forward
CNT3054595Setaria italicaAmborella trichopoda20.2773.4380.26152forward
CNT30105598Setaria italicaOryza longistaminata41.3344.9987.74310forward
CNT30319856Setaria italicaAsparagus officinalis3080.3684.89225forward
CNT30574680Setaria italicaOryza barthii33.0727.0789.92248forward
CNT30579496Setaria italicaEchinochloa crusgalli52.1310095.65391forward
CNT30499107Setaria italicaDigitaria exilis51.8799.4995.37389forward
CNT30115589Setaria italicaOryza nivara33.0717.3889.92248forward
CNT30594668Setaria italicaEragrostis curvula39.4787.8384.8296forward
CNT30603506Setaria italicaOryza punctata44.6766.7386.27335forward
CNT30174824Setaria italicaVigna angularis54.442.9582.35408forward
CNT30550386Setaria italicaOryza brachyantha36.1398.5587.82271forward
CNT30337932Setaria italicaCynara cardunculus30.2727.6881.5227forward
CNT30723923Setaria italicaLupinus angustifolius18.6768.2983.57140forward
CNT3064271Setaria italicaSelaginella moellendorffii34.6747.2778.46260forward

Expression of CNT30522345

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLGEGRVEEEEGRGEEEAEEDEEEALLPEEVGGEGAGE*

>peptide 2 (43 aa)
MAPVALLLWMLKWITIHLTGTSQQEPGPNPLSQSKHVQGPHDI*

>peptide 3 (94 aa)
MSSNRGFPRWCATLSLRPVKKLSTTMTLSPRARSLSTRWLPTNPAPPVTTTRREGFLTPTGRRRTPPRGIFRATATAMLVAEEEPAARCWVRDG*

Sequence

>CNT30522345
TAGCACACCTATGGGATTTACATGGCCCCAGTAGCTCTCCTTCTGTGGATGCTCAAGTGGATCACCATACACCTCACTGGTACTAGTCAGCAAGAACCGG
GCCCCAACCCTCTTAGCCAGTCCAAGCATGTTCAAGGTCCCCATGACATTTGATATGATGGTCTTGATGGGGTTGAATTTGTAGTGCACGGGGGATGCGG
GGCAGGCGAGGTGGTAGATCTGGTCCACCTCGAGGAGGATTGGCTCGACGACGTCGTGGCGGATGAGCTCGAATCGCGGGTTTCCGAGGTGGTGCGCGAC
GTTGTCCTTGCGGCCCGTGAAGAAGTTGTCGACGACGATGACGCTGTCCCCACGGGCGAGGAGCTTGTCGACGAGGTGGCTCCCGACGAACCCAGCGCCG
CCGGTGACGACGACGCGCAGGGAGGGTTTCCTGACGCCTACGGGTAGGCGGCGCACGCCGCCGCGGGGGATTTTTCGGGCGACGGCGACGGCGATGTTGG
TAGCGGAGGAGGAGCCGGCGGCGCGATGCTGGGTGAGGGACGGGTAGAGGAGGAAGAAGGAAGAGGCGAGGAGGAAGCCGAGGAGGACGAAGAGGAGGCG
CTTCTCCCGGAGGAGGTAGGAGGCGAGGGTGCGGGAGAGTGAGGTGCGGTGGTGGTGCGGCCGGTGCTGCTTGCTCATGCTCGACTGCCGGTGCAGCTGC
TTCATCGCGGGGTGGGTCGCGCCCTCTCGCCGGAGGCGGAGAAGAGTGGT