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Detailed information on CNT30522336


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 7e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Setaria italicaOryza sativa56.2316.8293.96149forward
CNT30678417Setaria italicaSetaria viridis35.0928.1810093forward
CNT30524833Setaria italicaPhaseolus vulgaris43.027.5384.21114forward
CNT30296550Setaria italicaTriticum aestivum48.6830.8692.25129forward
CNT30589135Setaria italicaMusa acuminata41.8928.9189.19111forward
CNT30553163Setaria italicaOryza glaberrima56.2310.8493.96149forward
CNT30439764Setaria italicaAegilops tauschii25.2814.3592.5467forward
CNT30447830Setaria italicaSaccharum spontaneum57.7426.7594.77153forward
CNT301613Setaria italicaZea mays58.8727.3794.87156forward
CNT30683865Setaria italicaTriticum urartu48.6830.591.47129forward
CNT30361641Setaria italicaSorghum bicolor44.9110.1196.64119forward
CNT30369879Setaria italicaOryza glumipatula56.2320.7593.96149forward
CNT30147849Setaria italicaBrachypodium distachyon43.0225.8588.6114forward
CNT30100699Setaria italicaOryza rufipogon56.2313.5593.96149forward
CNT30575527Setaria italicaOryza barthii46.7919.6597.58124forward
CNT30116295Setaria italicaOryza nivara46.7913.1697.58124forward
CNT30603857Setaria italicaOryza punctata106.4232.4186.88282forward
CNT3065479Setaria italicaSelaginella moellendorffii2015.7788.6853forward

Expression of CNT30522336

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSGRMLKRVRLNSCTAAGTSAPTASGAYPVAHAE*

>peptide 2 (40 aa)
HLGEEAGGGEVREVALGLEELDGGAAAEVGLEVGGDGDRC*

>peptide 3 (33 aa)
STWARRPGAERCGRWPSVWRNSTVVRPPRWALR*

>peptide 4 (31 aa)
APGRGGRGRRGAGGGPRSGGTRRWCGRRGGP*

Sequence

>CNT30522336
AGCACCTGGGCGAGGAGGCCGGGGGCGGAGAGGTGCGGGAGGTGGCCCTCGGTCTGGAGGAACTCGACGGTGGTGCGGCCGCCGAGGTGGGCCTTGAGGT
AGGCGGCGACGGAGATCGGTGTTGAACACCGTGCGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGAACTCCTGCACCGCCG
CGGGCACGTCCGCGCCCACCGCCAGCGGCGCGTACCCCGTCGCCCACGCCGAGTAGTTGGCCGCC