Detailed information on CNT30522214


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678489Setaria italicaSetaria viridis50.4565.2999.49395forward
CNT30305412Setaria italicaTriticum aestivum8.8123.2392.7569forward
CNT30588421Setaria italicaMusa acuminata9.3225.8984.9373forward
CNT30662767Setaria italicaTriticum dicoccoides10.9841.3593.0286forward
CNT30445673Setaria italicaSaccharum spontaneum10.9832.2197.6786forward
CNT3015514Setaria italicaZea mays20.8233.4797.55163forward
CNT30361636Setaria italicaSorghum bicolor10.622.5595.1883forward
CNT30100738Setaria italicaOryza rufipogon25.2953.0889.39198forward

Expression of CNT30522214

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVRYLSAYSISRLDTYFQNPYTPVRVISLSE*

>peptide 2 (50 aa)
MNATLISETATKAGAFIEGATSIHPGNKGAPMTDCTHTPHASPTTKSTQN*

>peptide 3 (30 aa)
MLLLFQKRQPRPVRLLKEQHPSIQETREHP*

>peptide 4 (52 aa)
MHTSPRYAGAHPARSCSSGWSPPCTSQRSPQAAPRPCRPGTGQCGSRTRRAR*

Sequence

>CNT30522214
TGAACCACAAAGATGAATGCTACTCTTATTTCAGAAACGGCAACCAAGGCCGGTGCGTTTATTGAAGGAGCAACATCCATCCATCCAGGAAACAAGGGAG
CACCCATGACCGACTGCACACACACACCCCATGCATCCCCAACTACCAAATCAACTCAAAACTAGCAGCAACGCCCACATCAATGGAAGACCTTGATTCT
TGATGCCCGCCTAGGAAAACCAAACTCTTCTTCTTTTGGCCTCAGAAATAAGGAAGGAACCCAGGAAAAGACGACTTCAAGTGCTCCCTTCTTTCAGGCC
CCGGCCGCCGCATCACTTGCTGGAGGGCTCTCCCTCCACGGCCAACGGCACCGTGCTGGCCATGGTGCGGTACTTGAGCGCGTACAGCATCTCCAGGTTG
GACACGTACTTCCAGAACCCGTACACGCCGGTCAGGGTCATCAGCCTCTCCGAGTAGAGCTTCCAGGTGTATCTGGATCAACAGAATTGGTGGAATAACA
ACATTAGCAAGTGAGAAACATTGCCATGGAAATACAGAGATCAGTGTGCTAGAAATAAGATGCATACTTCTCCTCGATACGCTGGAGCCCACCCTGCGAG
ATCTTGCTCCAGTGGCTGGAGTCCTCCTTGCACTTCTCAAAGAAGTCCACAAGCAGCGCCGAGGCCTTGTCGCCCTGGTACGGGTCAATGTGGTAGCCGG
ACACGCCGTGCACGATGATCTCAGCTGGACCACCGTAGGCGGTAGCGAATGTGGGCAGACCGCAGGTCATGGCCTCAACCACA