Detailed information on CNT30522203


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30799Setaria italicaZea mays59.5265.1895.56541forward
CNT30579510Setaria italicaEchinochloa crusgalli60.6249.1596.55551forward

Expression of CNT30522203

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMRRPWINHQETKATDDEHARTRCSGERS*

>peptide 2 (63 aa)
MLWGALLTVRRMVMRPPASAAAAGRETRAWPRKLVVWWSADAAIFCVSGEHDGAAAYWSVRLFS

>peptide 3 (61 aa)
WSDLKSSRAQSNTLARATTTRLLTSRGHITCRGRSWWRTPMRCWRRGRRRGRRGSRWVPCR*

>peptide 4 (58 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAPMSTTWQAQMARMLCACTRLGLPR*

>peptide 5 (55 aa)
MSMHVPDALGSALDGAAHGDAAAGIGGGGGAGDQGLAEEAGGLVERRRGHLLRVR*

>peptide 6 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30522203
TCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGAGCAGAGGGCACATCACTTGCCGGGG
ACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGTCCCTTGCCGGTGACGATGGCCTGCA
CGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGCCCATGAGCACGACCTGGCAGGCCCAGAT
GGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCG
CCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCGCGGTTGC
GCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGCGTCTGCTCCGAGAACGG
GCCCAGGTACTTGGGGCGGTCAGGGCCGTACCTGCACGTACGTAGCTGATGATGCGTCGTCCATGGATCAATCATCAAGAGACAAAAGCAACTGACGATG
AGCATGCACGTACCAGATGCTCTGGGGAGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGGCGGCGGCGGGGCGGGAGACCAGG
GCCTGGCCGAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGAT
TGTTTTCGG