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Detailed information on CNT30522168


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641254Setaria italicaNymphaea colorata58.5550.5584.71510forward
CNT30589923Setaria italicaMusa acuminata51.7899.3486.7451forward
CNT30450174Setaria italicaSaccharum spontaneum60.9664.5286.25531forward
CNT30142779Setaria italicaLolium perenne61.3160.284.83534forward
CNT30877Setaria italicaZea mays61.1962.6396.06533forward
CNT30685647Setaria italicaTriticum urartu53.7363.0788.68468forward
CNT30369325Setaria italicaOryza glumipatula52.2444.9287.47455forward
CNT30579738Setaria italicaEchinochloa crusgalli62.1146.2496.67541forward

Expression of CNT30522168

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPSGTTWQAQMARMLCACTRLGLPR*

>peptide 2 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30522168
TGACGGTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACG
TCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGA
GCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGT
CCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGT
CCGGGTCGTCGGCGAGGCCCAGCGGCACGACCTGGCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCC
GCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCG
CCGAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCGCGGTTGCGCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGC
CGGGGAACTCGCCGGTCAGGTACGACGGCGTCTGCTCCGAGAACGGGCCCAGGGCCTGGCCGAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCAT
CTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGATTGTTTTCGGCTGATCGAG