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Detailed information on CNT30522165


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554829Setaria italicaOryza glaberrima61.8347.4585.36567forward
CNT30684632Setaria italicaTriticum urartu52.2455.7687.27479forward

Expression of CNT30522165

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

>peptide 2 (35 aa)
MENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

Sequence

>CNT30522165
GAGATAACTAACTGAAGATCGATCTGACAAGTGACGGTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTT
AGTTTACAATAATTTTACATCGTCGGGCACGTCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTG
GCGCGTGCAACTACTACACGCCTACTCACGAGCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTC
GGCGACGTGGTCGAAGAGGTTCTCGATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCG
AGGCCCAGCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGTCCCTCCCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCA
CGACCTGGCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGC
CTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATC
ACCTCCAGCTCGCGGTTGCGCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGGCCTGGC
CGAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGATTGTTTTC
GGCTGATCGAGTGGTGG