Detailed information on CNT30522140


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M2U3|ALPL_ARATH, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677965Setaria italicaSetaria viridis11.8433.8998.22225reverse complement
CNT3017148Setaria italicaZea mays2.842588.8954reverse complement
CNT30103284Setaria italicaOryza rufipogon920.2185.96171forward
CNT30551052Setaria italicaOryza brachyantha4.4741.2685.8885reverse complement

Expression of CNT30522140

Peptides detected in this lncRNA

>peptide 1 (29 aa)
NKYHRERYKKKYDIILICSIQHIGYINLF*

>peptide 2 (30 aa)
MHASRMDLFLHQEINCKGGKSITFSGGCRA*

>peptide 3 (29 aa)
MALLLFLDLILYRYMAKHTRTLAINLLHI*

>peptide 4 (43 aa)
MHMRSRARVQRASKIRWKYLLTVSLDLITSKPIDLFDQRYPTQ*

>peptide 5 (48 aa)
MPHFPEVYHYNFLHFEAGLCTKSHHHKHTHLDHPVRSNYEVHNKPSQF*

>peptide 6 (31 aa)
MFHTTYWLHKPILELLLLYLPTSFEPSHLFY*

>peptide 7 (35 aa)
MDARISHGFISSSGNQLQRGEINYLLWGLPCLNLL*

Sequence

>CNT30522140
AACAAATATCATAGAGAAAGGTACAAGAAGAAATATGATATCATACTTATATGTTCCATACAACATATTGGTTACATAAACCTATTCTAGAGCTGCTCCT
ACTTTATCTTCCCACATCCTTTGAGCCATCACATCTCTTTTATTAGCCCATGCCACATTTTCCTGAAGTATATCACTACAATTTCTTACACTTCGAGGCA
GGGTTGTGTACCAAGTCGCATCATCATAAACATACTCATCTGGACCATCCTGTAAGATCCAATTATGAAGTGCACAACAAGCCATCACAATTTTGATTTG
AAAACGAAAGGCTGATTTGAGAAGATTTTGAAACAATTCTTGAGGGTACCAAATGCTCATTCAACTGTAGTTCTAAGGGAGGAATGGCGAAGATTGAATA
ATTCCTTTGGGCTCTCAGGCTCCCTGGTCCCCCTATACTCTTGTAGGTGATATCGGGTACCACGGTATGGGGGTAATACACCAGGCCTTGCTGCATATCC
AGCATTAGCTAGGAAATATTTGTCTACATCATTATTTTTTTACAAATTAATTAGCTAAGAATATAGGTGAAGTTTCATATTGCAGCTGTTAGGACATAAT
GGGGTATTCCTACCTTCTGGTATGTTAAGCCCATTAGGACGTGATAGAGCATCTTGAAGCACATAAGAATCATGGGCTGAGCCCTCCCATCCAGCAAGAA
CATATATGAATCTTAGGTCAAAATCAACTGCTGCTAGCACATTTTGGGTGGTAATTGACTTTCTACCCCTAAACCGATCTTGCATATGAAAAGGTACACA
TGCTGGTATATGTGTACCATCCAAAGCTCCTATGCATCCCTATGAAAATATTTTTAAAAAACAAATTAGATGAACATGACACCTAAGTGTACTCGAAATA
TTGATTATCAATTTTGATGTACCTCGAAGTAAGGGTGAAATATGCCCGGAGAACTTGTTATCGTTGAATGTGTCTAAACAGATCTGATGCATATGAGGTC
ACGAGCAAGGGTACAAAGGGCATCTAAAATAAGATGGAAATACCTACTAACAGTTTCACTTGACCTAATAACCTCAAAACCTATTGATCTGTTTGACCAG
CGTTACCCAACACAATGAATAAACATAGCAACTTGTTCCTCTATTGTGACATGAAAAGTCTCCTCTAGCAAGGCACGCGATCTAAGTTCATCACATAGTC
TATGGAAGACAGCTTTCCTCATACGCAACTCATTTATGCAATGAGCCTCGGTACCATGATACAAACAATTTAGACGTGACAATCTTTCAACATCTCTATC
TATCATGGGAGCATAAGTTATGGCCCTTCTTCTTTTTCTTGATTTAATCCTATACAGGTACATGGCCAAACACACAAGAACACTGGCAATTAATCTTCTC
CACATATAATGGCAGTAGTCCAAGTAATACTGGAAGTATAATTTTCTTTGACCCATCTTAAACATCGTTCAGAAAAGATGAAAATCAGTAATAAACTAGA
AAGTATCAAGCATACAGAAGAAAGGAAAGCTAACTAGCAATACAGTAGATGGATGCACGCATCTCGCATGGATTTATTTCTTCATCAGGAAATCAATTGC
AAAGGGGGGAAATCAATTACCTTCTCTGGGGGTTGCCGTGCTTGAACCTTCTTTAGCTGCAGGGATTGATTGCTGCGCATGACCCAACACCATGAGATGA
TGGATCTTCACCTTGGGAGATCTGCACACCTTGTTAACCTGTAGCCTGCAGGGACTGGTGCTGCGTGTTGCTCCCCTGGACGCACGGTGTGCCGCCCTCA
GCGTGGCGGCCAGGCCCCTTGGCACGCGACGCTGCCCCCTGGGCGCGCGCAGTCCCAAGCGCGGTGGTGGCGGATGGCCTGGGATGACAGTTTTTTTTCA
T