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Detailed information on CNT30522081


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 7e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Setaria italicaOryza sativa41.4548.5894.17240forward
CNT30289434Setaria italicaTriticum aestivum37.8237.8291.78219forward
CNT30392320Setaria italicaTriticum turgidum33.859892.35196forward
CNT30554471Setaria italicaOryza glaberrima3839.9392.27220forward
CNT30439818Setaria italicaAegilops tauschii36.9671.5792.06214forward
CNT30249006Setaria italicaAvena sativa40.4126.991.88234forward
CNT30444735Setaria italicaSaccharum spontaneum40.4140.9896.58234forward
CNT30721558Setaria italicaTriticum spelta3898.2192.27220forward
CNT30341886Setaria italicaEragrostis tef35.0674.9193.1203forward
CNT30369862Setaria italicaOryza glumipatula37.3198.1893.98216forward
CNT30106627Setaria italicaOryza longistaminata34.3798.0393.97199forward
CNT30102628Setaria italicaOryza rufipogon38.3417.4992.34222forward
CNT30575680Setaria italicaOryza barthii39.2191.1694.27227forward
CNT30116256Setaria italicaOryza nivara39.2110093.39227forward
CNT30593977Setaria italicaEragrostis curvula38.3410094.14222forward
CNT30604388Setaria italicaOryza punctata24.3542.4793.62141forward
CNT30551356Setaria italicaOryza brachyantha24.8741.6293.06144forward

Expression of CNT30522081

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MLVPSRTPPWSLSPWKASKLRRMLFTMRMQRKPLPTSPLSVHSTDSSWYSGLNGTSFT*

Sequence

>CNT30522081
GCAACAATCAGGTGTCATTAATATTCTGTTAACGACATATTAGAAAAATATAGTAATTGAAAAGGAAACGAGGAGATAAGCTATCAGTGTCTACCGACAC
TCGCTTTGTGAAACTTCTAGTGCGGGTTGGTAAGATGTTCAGAGATTTTCTACTCTCTGAAATCAAGATTCAGGAAAAAAGCAGTGGCAGCTAGTAAGAC
TGGTGAGACTCCTTACACCAGGGAACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTTGGTGCCGTCGCGCACCCCGCCGT
GGTCCTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGCGGATGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTGCCGACGTCGCCGCTCTCAGTCCACAG
CACGGACTCGTCCTGGTACTCCGGGTTGAACGGCACCAGCTTCACCTGAAAACAAAAAAGGCAGGCAGGCCGCTCAGGTTTCCGATCTCAAAAGAACCAA
CAAGAACGATGCAGGCAAAGAACTGCCGACGGATCAAATCAAACAGTAAAAGAAACCCAAGATCAGAGAGGGGATCAGG