« Back to Setaria italica search


Detailed information on CNT30522059


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005134, E-value = 4e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678235Setaria italicaSetaria viridis62.1410099.67302forward
CNT30189491Setaria italicaSecale cereale23.4641.1684.21114forward
CNT30224680Setaria italicaHordeum vulgare63.3745.6383.12308forward
CNT30553869Setaria italicaOryza glaberrima38.8935.5384.66189forward
CNT30448340Setaria italicaSaccharum spontaneum69.5561.6889.35338forward
CNT30149Setaria italicaZea mays69.5561.4587.28338forward
CNT3067447Setaria italicaLeersia perrieri56.3848.582.12274forward
CNT30351983Setaria italicaEragrostis tef23.8753.2187.93116forward
CNT30595883Setaria italicaOryza meridionalis34.3629.5685.63167forward
CNT30105638Setaria italicaOryza longistaminata34.3618.0786.23167forward
CNT30101734Setaria italicaOryza rufipogon38.8918.9284.66189forward
CNT30575498Setaria italicaOryza barthii34.3626.6385.63167forward
CNT30604101Setaria italicaOryza punctata22.2234.8483.33108forward

Expression of CNT30522059

Peptides detected in this lncRNA

>peptide 1 (41 aa)
KCCGASIYETRNTFRPFNLQKHTHINFFSLRGVISSVQPCN*

>peptide 2 (48 aa)
MTQLSPLKYTRRGKAHPFSKVKVWESLRRSSSPCTLPILLPACISTSL*

>peptide 3 (50 aa)
MESDINLKLTKPPDPTHHAYANRVANTTQNTKSGRVSGCFVRGLALGNHG*

Sequence

>CNT30522059
CTAAGTGTTGTGGGGCCAGTATATACGAAACAAGAAATACATTTCGGCCCTTTAACTTACAAAAACACACACACATAAACTTTTTTTCTCTGCGTGGTGT
CATCTCTTCTGTGCAACCATGTAATTGAATGAACAAATGACCCGTTGCAGTGCACCTCATGGAATCTGACATCAACTTGAAGCTCACTAAACCTCCTGAT
CCCACTCATCATGCATATGCCAACAGAGTAGCCAACACAACCCAGAATACTAAAAGTGGGAGGGTCAGCGGTTGTTTTGTTAGAGGGCTTGCGTTGGGCA
ACCATGGATAGTTTTCAGGAGATGGCATGACACAGTTGTCACCATTGAAGTACACTCGGCGTGGGAAGGCCCATCCCTTTTCGAAGGTGAAAGTCTGGGA
GTCCTTGCGGAGAAGCAGTTCGCCCTGCACACTCCCAATCTTATTGCCGGCTTGCATCAGCACATCGTTGTAGGGTTTTACACCCC