Detailed information on CNT30522056


BLAST search results

BLAST vs Swiss-Prot:
sp|O82392|THIC_ARATH, E-value = 7e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677735Setaria italicaSetaria viridis39.955.8299.75403forward
CNT30549847Setaria italicaIpomoea triloba16.1439.9580.37163forward
CNT30727441Setaria italicaCorchorus capsularis21.3935.7680.09216forward
CNT3094458Setaria italicaSolanum tuberosum25.4549.982.1257forward
CNT30144834Setaria italicaMedicago truncatula9.3123.2188.394forward
CNT301264Setaria italicaZea mays16.347592.73165forward
CNT30340692Setaria italicaEragrostis tef14.654189.86148forward
CNT30483750Setaria italicaChara braunii9.3126.3385.1194forward
CNT3048758Setaria italicaCucumis sativus15.2527.780.52154forward

Expression of CNT30522056

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAVTGSRDRANWSSHLNSNLALLRASSQACA*

>peptide 2 (43 aa)
MHWDVPWTFIHHLKVDRYQEVCPKVSTIELYTNHGLQISNLKL*

>peptide 3 (52 aa)
FPTDCFPCSQKFSTHSIHSFLHSFLYCSVTMFICIFSNILCDFHRTKLGPTH*

>peptide 4 (73 aa)
MTLCQISSMSSNFVGYHTCLNIITIRQPKVRYQLSVDPTYRKVLHYTTPAVFPCFQEFYALGCALDLHSSPKS*

Sequence

>CNT30522056
TTCCCCACTGATTGTTTTCCTTGCAGCCAAAAATTCAGCACTCATAGCATTCATTCCTTCCTTCACAGCTTCCTCTACTGTTCCGTAACCATGTTCATCT
GCATATTTTCTAATATCCTCTGTGATTTTCATCGAACAAAACTTGGGCCCACACATTGAGCAGAAATGAGCTACTTTGGCACCCTCAGATGGCAATGTTT
CATCATGGAAAGCCATGGCGGTTACTGGATCCAGAGATAGAGCAAATTGGTCGAGCCATCTAAACTCAAACCTTGCCTTGCTAAGGGCATCATCCCAAGC
TTGTGCGTAGGGATGACCCTTTGCCAAATCAGCAGCATGAGCAGCAATTTTGTAGGATATCACACCTGTCTTAACATCATCACGATTAGGCAACCCAAGG
TGCGATATCAGTTGTCAGTGGACCCAACGTATAGAAAGGTGCTTCATTACACCACTCCAGCTGTTTTTCCATGTTTTCAGGAATTTTATGCATTGGGATG
TGCCCTGGACCTTCATTCATCACCTAAAAGTTGATAGATATCAGGAAGTTTGCCCCAAAGTTTCAACTATTGAGTTATATACAAACCATGGTCTACAAAT
CAGCAATTTGAAACTTTGAATCATCTAGTACTTTGTTATATATTAGTCGATTTAACAGAAAATTCCTAGGTAAACTTAACTGCACTGGAAATAAGAGCAG
ATCACTGATTAGATGTTAAACAGCTAGATGGTATTAGGAGTGGCATATTTTATGTTTGATATGCAATCTGTTGATCCAGCAATCATATTTAGTTGTATTG
CAAAAGGATAGCTTGATTCACTGTTTTCCTTTCTGTCAAACTCGCATTTTTCAAATCCAACAAGTTTTGAGTATAGATCCTCACAAGTTACAATATAGAA
TACTTTTCTGACCAGATCTGCACAGGCGCTACCATTTCCAACTAATCATTTACCTTATGCATTTTGAAGTTAAACCATGTTTATGTTCAGAACAGGTTTT
TTATTCTCAC