Detailed information on CNT30522020


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 6e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695219Setaria italicaOryza sativa69.8364.0291.84331forward
CNT30678303Setaria italicaSetaria viridis41.1454.78100195forward
CNT30515464Setaria italicaJuglans regia29.7512.782.27141forward
CNT30630888Setaria italicaVigna unguiculata37.5526.2981.46178forward
CNT30299532Setaria italicaTriticum aestivum53.3849.6194.86253forward
CNT30395090Setaria italicaTriticum turgidum59.9226.4295.07284forward
CNT30554655Setaria italicaOryza glaberrima59.732.3494.7283forward
CNT30440464Setaria italicaAegilops tauschii59.9234.2294.72284forward
CNT30246994Setaria italicaAvena sativa59.9234.0194.37284forward
CNT30665854Setaria italicaTriticum dicoccoides59.9253.9995.07284forward
CNT30228866Setaria italicaAnanas comosus48.7326.4388.31231forward
CNT30344027Setaria italicaEragrostis tef59.0734.6595.71280forward
CNT30362113Setaria italicaSorghum bicolor29.1120.8597.1138forward
CNT30596794Setaria italicaOryza meridionalis59.742.6894.35283forward
CNT30370811Setaria italicaOryza glumipatula59.735.7894.7283forward
CNT30570681Setaria italicaVitis vinifera27.649.5885.5131forward
CNT30148662Setaria italicaBrachypodium distachyon58.6536.192.45278forward
CNT30577354Setaria italicaOryza barthii59.734.4394.7283forward
CNT30579660Setaria italicaEchinochloa crusgalli70.2555.1396.4333forward
CNT30499040Setaria italicaDigitaria exilis42.4129.5694.53201forward
CNT30117312Setaria italicaOryza nivara59.735.9194.7283forward
CNT30174623Setaria italicaVigna angularis37.5520.8983.15178forward

Expression of CNT30522020

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSKVFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

>peptide 2 (31 aa)
MAIVGLILGRAGAASWSKAKSKMARRDEEWRA

Sequence

>CNT30522020
CCCTCCATCAACCACCCAACACCAGCTAAGAGAAAGAGATGGATGAGATCACTTAGATGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCT
GACGTTCTTGCCGATGCTGCGGAAGTTCTGCCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGGACC
TCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCA
GGAGGTTGGGCCCCTCCCGCATGATGGCGGCGCCGCGGCCAAGAGGTGGCGCGTCGCGGCGGAGGCTTGCGTGGCCATGGCCATCGTCGGCTTGATTCTC
GGACGAGCTGGTGCGGCTTCTTGGAGCAAAGCTAAGAGCAAGATGGCGAGGAGAGATGAGGAGTGGAGGGCGCG