Detailed information on CNT30521971


BLAST search results

BLAST vs Swiss-Prot:
sp|P31853|ATPF2_SPIOL, E-value = 2e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295400Setaria italicaTriticum aestivum50.4355.290.22409forward
CNT30223111Setaria italicaHordeum vulgare47.4751.5490.39385forward
CNT30662856Setaria italicaTriticum dicoccoides50.6863.7290.27411forward
CNT30447424Setaria italicaSaccharum spontaneum66.9548.9292.45543forward
CNT30135603Setaria italicaLolium perenne50.4343.8890.95409forward
CNT30683548Setaria italicaTriticum urartu50.4338.9590.22409forward

Expression of CNT30521971

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MMAAACSSSCLTSSEASLTSPSSPRILASRSSMNLPSGVK*

>peptide 2 (98 aa)
MSSRNSVAIAGSVRSGAARRGEQEVVAAAIRAVAMGARRGAGGVGVEERRLAQWRGGGERRRGEAGDRLSIRTGWVVVADERRPHDADARFTTTSAFPS

>peptide 3 (38 aa)
MDGSPTSVYTQIRKLSEEEEAIRPARWSGFLTRMGAPS*

>peptide 4 (32 aa)
LGTKCRCNYSHRIKQGRRWTAAQQAYTHRSES*

Sequence

>CNT30521971
ACTTGGCACAAAATGTCGATGCAATTACAGTCATAGGATAAAGCAGGGCCGCCGATGGACGGCAGCCCAACAAGCGTATACACACAGATCAGAAAGCTAA
GCGAGGAAGAAGAGGCCATCCGGCCGGCTCGCTGGTCCGGTTTCCTCACGCGGATGGGAGCACCTTCTTGACGATCTCGTCGCTGAGCGAGGCGATCTGT
GCGTCGAGCGCCTTGACGGCCTCCTCCTTCTGCGCCTCGAGGTTGGCGAGCGCCTCGACGAGCTCGGCCTCGACGCGGCGGCGGCCCTCGTCCAGCTTGG
CCTCCAGCTCGGCGGTGGTCTCCTTCTTCATCTTGTTGAGCGCCGCGGCGATCTCGGCGCGCGCGGCCTTCATGATGGCGGCCGCCTGCTCCTCCAGCTG
CTTGACCTCCTCGGAGGCGTCCTTGACGTCGCCAAGCTCGCCGCGGATCTTGGCGTCCCGCTCGTCCATGAACTTGCCGAGCGGCGTGAAGTAGAGCTTG
TCCAGCGCCACCATGAGCAGCAGGAACTCGGTCGCGATCGCCGGGAGCGTCAGGAGCGGCGCCGCGCGGCGCGGGGAGCAGGAGGTGGTGGCCGCAGCCA
TCAGAGCCGTCGCCATGGGTGCGAGGCGGGGAGCCGGAGGGGTGGGTGTGGAAGAGCGGCGGCTAGCTCAGTGGAGGGGTGGTGGGGAGAGACGGAGGGG
GGAGGCGGGCGACCGGCTATCTATCCGAACGGGTTGGGTTGTGGTGGCCGATGAACGGCGGCCACACGATGCCGATGCTCGCTTCACTACCACGAGTGCA
TTCCCTTCCCG