Detailed information on CNT30521866


BLAST search results

BLAST vs Swiss-Prot:
sp|P80607|RGP1_MAIZE, E-value = 6e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678520Setaria italicaSetaria viridis96.0570.3499.74389forward
CNT30278831Setaria italicaChenopodium quinoa25.1925.3782.35102forward
CNT30143197Setaria italicaLolium perenne54.0741.5690.41219forward
CNT30683620Setaria italicaTriticum urartu46.4237.1591.49188forward
CNT30575864Setaria italicaOryza barthii49.8830.1592.57202forward

Expression of CNT30521866

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MGPRQAPIILHHFEGEVKTPGAPSTWPCRSQLRRWSGSAHPRPRSSFSFTCPER*

>peptide 2 (50 aa)
MVTFWKKGMMSSCQKMPLYSFFKLTKGLLALLCQMYGRPVLTPRLKWSQMT

>peptide 3 (33 aa)
KAAAELISLPSQKELYLWGLGRPQSYFITSKGK*

Sequence

>CNT30521866
AAAGCTGCTGCTGAATTAATCTCTCTTCCCTCTCAAAAAGAGCTATATCTATGGGGCCTAGGCAGGCCCCAATCATACTTCATCACTTCGAAGGGGAAGT
GAAGACTCCAGGGGCTCCATCTACTTGGCCTTGCCGTTCTCAGCTGCGGCGGTGGTCGGGTTCAGCTCATCCCAGGCCTCGATCCAGCTTCTCCTTCACC
TGCCCAGAGAGGTAGATGTAGCACTTCTGGACTGTGTCACACTCCTTGGGGATGGTCACGTTCTGGAAGAAGGGGATGATGTCCTCCTGCCAGAAGATGC
CCTTGTATTCCTTCTTCAAGTTGACGAAGGGGTTGCTAGCCTTGCTGTGCCAGATGTATGGCAGGCCAGTCTTGACACCCAGGCTCAAGTGGTCGCAGAT
GACCT