Detailed information on CNT30521860


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Setaria italicaOryza sativa47.6449.7288.01534forward
CNT30285424Setaria italicaTriticum aestivum42.9167.5687.73481forward
CNT30589400Setaria italicaMusa acuminata33.0154.0991.89370forward
CNT30555049Setaria italicaOryza glaberrima47.6445.3388.2534forward
CNT30665715Setaria italicaTriticum dicoccoides40.4153.3692.72453forward
CNT30455809Setaria italicaSaccharum spontaneum51.0352.5387.59572forward
CNT30345522Setaria italicaEragrostis tef48.0854.2888.5539forward
CNT30369277Setaria italicaOryza glumipatula47.6454.7788.76534forward
CNT30103422Setaria italicaOryza rufipogon53.2646.0388.61597forward
CNT30575045Setaria italicaOryza barthii52.7262.6188.16591forward
CNT30497363Setaria italicaDigitaria exilis53.2650.7286.1597forward

Expression of CNT30521860

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MLWGALLTVRRMVMRPPASAAAAGRETRAWPRKLVVWWSADAAIFCVSGEHDGAAAYWSVRLFSADRVVG

>peptide 2 (50 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

>peptide 3 (55 aa)
MSMHVPDALGSALDGAAHGDAAAGIGGGGGAGDQGLAEEAGGLVERRRGHLLRVR*

>peptide 4 (29 aa)
MMRRPWINHQETKATDDEHARTRCSGERS*

>peptide 5 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30521860
GTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACGTCCAG
GCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGAGCAGA
GGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGTCCCTT
GCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCCGGG
TCGTCGGCGAGGCCCAGCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGTCCCTCCCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGC
CCATGAGCACGACCTGGCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTG
CGCGCCGGCCTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGC
GAGTGGATCACCTCCAGCTCGCGGTTGCGCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCA
GGTACTTGGGGCGGTCAGGGCCGTACCTGCACGTACGTAGCTGATGATGCGTCGTCCATGGATCAATCATCAAGAGACAAAAGCAACTGACGATGAGCAT
GCACGTACCAGATGCTCTGGGGAGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGGCGGCGGCGGGGCGGGAGACCAGGGCCTG
GCCGAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGATTGTTT
TCGGCTGATCGAGTGGTGGGA