Detailed information on CNT30521857


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VY90|EF105_ARATH, E-value = 6e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Setaria italicaOryza sativa753.3686.55119forward
CNT30254792Setaria italicaAvena sativa7.1227.0787.6121forward
CNT30229217Setaria italicaAnanas comosus3.7126.3690.4863forward
CNT30338289Setaria italicaEragrostis tef7.9548.9185.19135forward
CNT30101508Setaria italicaOryza rufipogon7.1246.3688.43121forward

Expression of CNT30521857

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MHPASCSRSAGSGDLALLLLPAVAALGRGAAAGGPHRAAVPKATSLGKLRMAFEPRRRNAARS*

>peptide 2 (75 aa)
MDQLRVRRQRRQAADRPLQQLLLLPEEVRRAFARRRRRHDHGAIPTTARGGLLNPLFLHLPDHAPGVLFSQRWLR*

>peptide 3 (55 aa)
MDAWTSCGYGDSGGRLQIVPFSNSSSSQKKSAAPSLAAAGAMTTAPSQPQLAAGS*

>peptide 4 (62 aa)
MLPGAPHEAGEDGLVVVACRLPVDLQGSGRGPTSEEDGDRSKLDCSILILSSFLIENNWLLNF

>peptide 5 (31 aa)
MEPPDKREDVDMQNLLMDPFLLAQLRKVPMN*

Sequence

>CNT30521857
TGACAATCAATTCATAGAATAGATCGTCACGCATATGATTGGGTAAAATCCTCTCTATACACACGTCAACTGCTGCCAAAACCTATAACGCTGGTTAGCC
AGAGGGCTCTCGGTAGGTTTGTGTATGGAGCCACCGGATAAGAGAGAAGATGTCGACATGCAAAACCTTCTGATGGATCCATTCCTTTTGGCTCAGCTCC
GAAAGGTACCCATGAACTGATTTGAAATTTCACACGCACATAGATCCACATTTAGTTCATTTCATTTGCAGCTCAGCGAAGAACGTTTTACTTATCGTTT
GGATTAAGATACCTGAATGAATAAATAACGAACGAAAGAATATTTGGTGGAGTCATACTCCTGGTAAAATATCAAAGAACTCTTTAAAGTAGTAGATTAA
CACTAATTCTTCAGCTTTTTTTTGAAGAAATCACTAATTCTTCAGTTAATTAGGAGACCGTGCACCCTTCACCATGCTTTAGGCACAGATGGACGCATGG
ACCAGCTGCGGGTACGGCGACAGCGGCGGCAGGCTGCAGATCGTCCCCTTCAGCAACTCCTCCTCCTCCCAGAAGAAGTCCGCCGCGCCTTCGCTCGCCG
CCGCCGGCGCCATGACCACGGCGCCATCCCAACCACAGCTCGCGGCGGGCTCCTGAACCCGCTCTTTCTTCACCTCCCTGACCATGCACCCGGCGTCCTG
TTCTCGCAGCGCTGGCTCCGGTGACCTCGCCCTCTTGTTACTACCGGCGGTGGCAGCGCTGGGACGGGGAGCGGCGGCAGGGGGTCCCCACCGGGCGGCG
GTGCCGAAGGCGACCTCGTTGGGGAAGTTGAGGATGGCCTTCGAGCCGCGCAGAAGGAACGCGGCGCGGTCGTAGGCGCGCGCGGCCTCCACGGCGGTGT
CGTAGGTGCCGAGCCACACGCGCGCGCCCTTCCGCGCCGGGTCCCGGATCTCCGCCGCGTACTTGCCCCACGGCCGCTGCCGCACGCCGCGGTACCGCCG
GAAGTCGTCCTCCTCAGGTCCCGGGAAGCAGTGCTGCTCCTGCTGGTGGTGGTGAATAATCTGCGGCGGCGGCGGCGGCGCCCAAAGCTGCTGCTGCTGC
AGGGCGACAGCCGCGGTCCTCGGGGGCAGCGCGACGGAGAGCGCCGGAAGCGGCCTCCGCCCGGCAGCCGGCGGCGAGGGCGGGGGCGAGGACGCTGAGT
AGTCCTCGGAGCTGGCGGCGGCGGCGGCGTCGTGGGAGTCGTCGAGGAGGTGGGCGCGGATGATGTCGAGGTGCTCGTGCAACAAGGCCATGGCGCGCCG
CAGAGTCGAGCTGGGAGACTAGCTTAAGAGGAGGCCGGAGAGGAAGACCTGCACGGCGAGCGCGCTGCCGCGACGTCGCTTGGCTGCGGTGCGTGCGTCT
GCGTGTGGACGTGTGGTATGCGACCGTGGTGGTGCTCGGCTACACGCATGGTGTCCCATATATATCCAAGGGTGTCTGATGGGATAAGGTGACATCACGT
TGGTTCGAGGATGCTTCCCGGCGCGCCGCACGAAGCAGGGGAGGACGGACTAGTGGTCGTGGCTTGTCGCTTACCGGTAGACCTGCAGGGAAGCGGTCGC
GGTCCGACTTCCGAGGAAGATGGCGACCGCTCTAAATTGGATTGCTCCATCCTGATTTTGTCTTCTTTTCTTATAGAAAATAACTGGCTTTTAAATTTT