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Detailed information on CNT30521811


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FMF7|DIT21_ARATH, E-value = 4e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30307554Setaria italicaTriticum aestivum17.5422.0485.95121forward
CNT301414Setaria italicaZea mays17.5426.9588.43121forward

Expression of CNT30521811

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MARRGTEALMVRGEQGGGGGGGGGRPAPVPPPPGETAGERRRGRSPSVAAESVWRSGQWAGGGRWF

>peptide 2 (74 aa)
MVERKMESICHALGLTSAGRGARNRTARPTAMEMTSGTSFAPEAAGGSGLGLESGAGEARRGCRRSWRGVGLRR*

>peptide 3 (33 aa)
MESDLMIGRKMPPALAAVLGMAGAMQASPRVSP*

Sequence

>CNT30521811
TCCGAGCTTCCGTGAAGATGGATGATTGGGCTTGCTGCCAGCCGAGATGGAGAGTGACTTGATGATCGGCAGGAAAATGCCCCCTGCCCTCGCCGCGGTG
CTGGGCATGGCCGGCGCTATGCAGGCCTCGCCGAGGGTGAGCCCGTAGGACAGCCCCAGCGTGCTGCTCCCGAGCCACTTGACGAAGTAGGCGGCGAAGG
CGGCGGCGAAGGGGAGCGTTTTCGTGGCAACGACGGTCGTGAGCCCGAGGAAGGCCACGGCGCCGACGGGGAGCGGGCCCAGCACGAGCCCCGCGATGGT
GGAGAGGAAGATGGAGAGCATCTGCCACGCGTTGGGGCTCACCTCGGCGGGCCGCGGCGCGAGGAACCGCACGGCGAGGCCGACCGCGATGGAGATGACG
AGCGGCACAAGCTTCGCACCGGAGGCGGCGGGGGGCTCTGGTTTGGGGCTAGAATCAGGGGCTGGGGAGGCTCGGAGAGGCTGCAGGAGGTCATGGCGAG
GCGTGGGACTGAGGCGTTGATGGTGCGGGGAGAACAGGGAGGGGGAGGTGGCGGCGGCGGAGGTAGGCCGGCGCCGGTACCGCCGCCACCGGGAGAGACG
GCCGGTGAGCGACGACGAGGCCGATCTCCATCGGTGGCAGCGGAAAGTGTGTGGCGGAGTGGGCAGTGGGCGGGAGGCGGGCGGTGGTTC