CANTATAdb - search

Detailed information on CNT30521777

BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 4e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30376827	Setaria italica	Arabidopsis thaliana	16.04	54.24	82.81	128	forward
CNT30474628	Setaria italica	Saccharum spontaneum	21.55	14.47	96.51	172	forward
CNT30606039	Setaria italica	Gossypium raimondii	15.79	26.58	83.33	126	forward
CNT30686633	Setaria italica	Triticum urartu	8.4	24.19	100	67	reverse complement
CNT30596369	Setaria italica	Oryza meridionalis	8.52	24.37	98.53	68	forward
CNT30154413	Setaria italica	Prunus persica	16.04	33.07	85.16	128	forward
CNT30114434	Setaria italica	Eutrema salsugineum	15.66	31.41	83.2	125	forward

Expression of CNT30521777

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKRPTR*

>peptide 2 (63 aa)
METGANLGGELLAGGLPSGGLAGGLLRTGHLSSSRRLPSSSLRFSPRLIWGLELDGDQAAGAER

Sequence

>CNT30521777
AGTAACAGCACGGATTAGGTCTTTAACAAGCTTAGCTCCACATCTCGAAGCGAAGCCAAAATAACAGCAGAGCACGAAATAGACTTGTAAACCTGTTTTT
ACACTAACCAACCAAATCGAGAAACCGACAGCTAATACTGCTAATTCAGATCTGCTAGACGCTTCAGGAGGAGATCAACAAGCCGATTCCATCTTGACCT
CCTCCCCTCCCTCCTGACTGCTGGAAACGGCGGCGGGGGCGGCCGCTTACGCGCGCTCGCCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGAT
GGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGACCGACGAGGTAGGCCTCGGCCGCCTCCTGGAGCGCCAGGACCGCGTGGCTC
TGGAACCGGAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGGACCAGGCCTGTAGCGGTGGGGCTTCTTCACGCCGCCGGTCGTCGGCGCAGACTTCCTC
GCCGCCTGCAAACCAATCCCAGACGCATATCAGCACAACTTGCCTCAAAACAGCCAGCGAATCTCGGCGAGAACAGAGCAGATCGGAAGGGAACAACGCG
AGGGATGGAGACGGGGGCGAACCTTGGTGGCGAGCTGCTTGCGGGGGGCCTTCCCTCCGGTGGACTTGCGGGCGGTCTGCTTCGTACGGGCCATCTCTCC
TCTTCTCGGCGACTTCCTTCCTCCTCCCTTCGCTTTTCTCCTCGGCTGATTTGGGGGCTGGAACTCGACGGCGACCAAGCGGCGGGTGCGGAAAGGCT