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Detailed information on CNT30521727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694403Setaria italicaOryza sativa15.7220.0485100forward
CNT30673696Setaria italicaSetaria viridis86.16100.1897.99548forward
CNT30443761Setaria italicaAegilops tauschii28.7738.5390.71183forward
CNT30254859Setaria italicaAvena sativa25.3160.5384.47161forward
CNT30669606Setaria italicaTriticum dicoccoides35.8541.8390.35228forward
CNT308481Setaria italicaZea mays40.8844.8389.23260forward
CNT30344603Setaria italicaEragrostis tef23.930.2895.39152forward
CNT30364335Setaria italicaSorghum bicolor28.4620.7693.37181forward
CNT30148497Setaria italicaBrachypodium distachyon12.7427.8493.8381forward
CNT30102355Setaria italicaOryza rufipogon34.7537.3390.05221forward
CNT30576871Setaria italicaOryza barthii24.5318.1488.46156forward
CNT30580609Setaria italicaEchinochloa crusgalli70.7585.5589.78450forward
CNT30497096Setaria italicaDigitaria exilis26.2643.2694.61167forward
CNT30115974Setaria italicaOryza nivara9.1226.4891.3858forward

Expression of CNT30521727

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MMMSPMLLCHGSARWAGRGWPGIHSADMVTRPEVVALAQNGSRPERDDGASRLGTPTALQLRSPLDDAITIAAC*

Sequence

>CNT30521727
CGCTGAACTTCCTCTGATTTGCCCTTCGGCAAAACAATGGGGAACATAGCAAAGCTATAGTTTGGTTTTGGCACAAAACTTGGGTGGATTCATAAGGGTA
GCCGCTACTTAATAATAATAAGCTTTACATTATAAGGGGTTCCCGGCCGGCCGGAAAGTCGCCGTCGTTGTTCGTTGTACAGTTCCTGCACGCACGCAGG
CAGTGCCCAGTAACCAACCAATCACACACATAGAACATCATCCACACTCCCAGCACAGCCCCATCTCCTGTCTCGTCTCATCCTCTTCTCTCACAATCAT
CTCAGCTCAAGGGTAGATCGTTCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGGGCGGGGCGGGGCTGGCCGGGCATCCAC
TCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTTGGCGCAGAACGGCAGCCGGCCGGAGCGGGACGACGGCGCCAGTAGGCTGGGCACGCCCACGG
CGCTGCAGCTCCGGAGCCCGCTCGACGACGCCATCACCATTGCCGCTTGCTGATCCTGAGGTGACGGGGAGACGAGAGGAGGGAGGGAGGACAAGTGGCG
TTTGAGAGCGGAGCAGAATCTGCGGCTGCTATTAAG